Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03552 ATGATGAAAATTGTGTCCCCCATCTATGTGCCTGAACTTGGTTTTGAGGATCTCAATTTCTTTCACCAATACCCTATGGATTCTCTTTCATCTCCATTTGACAACTTTGACAACAACTACGAAACAGCACCAAATTGTTTACCACTTGAAACTCATCCTGATGATCATTACGTTGCTCAAACAAGATCAACCAAGAAGATCAAGACTTCGATAAACCTTCCTTCATATTCATCACCTCAACTCATTTCTTTTGAGAACTTCAATGCAACACCAGTTGCTTCTAGCGAACTTTACGACCTCGATTATTCTGATGTAAAGCCTAAACTCCAGAAAGGGTATAATGAAAACAAAGAAATTGCCGCAAATTATGATATCCGAGCGAATCAGACAAGGAACACAACTCAAGCAAAAGAACATGTAGTGGCTGAGAGAAAACGAAGAGAAAAGCTCACCAGAAGTTTCATTGCTCTTTCTGCCATCGTTCCTGGCCTCAAGAAGATGGATAAGGCTTCGGTGTTGGGAGATGCAATAACCTATATGAAAAAACTACAAGCACGTTTGCATACACTAGAGGAACAAGCTGAAGACAACAAAAAAACTGGATCTGCTATACAAGTGAAGAGATCTGTTATCTTCACTGATCACCATGATGATGATGACAGCAGCAACTCCAACAACCAAACACTTCCTGAAATCGAAGTAAGAGTTTCAAGAAAAGATGTACTCATCAAGATCCAATGCGAAAAACACAATGGACGTGCCTCTACCTCTACGATACTCGGAAAATTAGAAACCCTAAACCTTACAGTTCAAAGTAGTAACTTATTGCCCTTTGGAAACAACATTGCTGATCTAACTATTGTAGCTCAGATGAACGAGGAAAACTGTGTGACAGCAAAGGATCTCCTGGGAAGCATACGAAATGCATTAATCATCAATAATAATTAA 948 0.3892 MMKIVSPIYVPELGFEDLNFFHQYPMDSLSSPFDNFDNNYETAPNCLPLETHPDDHYVAQTRSTKKIKTSINLPSYSSPQLISFENFNATPVASSELYDLDYSDVKPKLQKGYNENKEIAANYDIRANQTRNTTQAKEHVVAERKRREKLTRSFIALSAIVPGLKKMDKASVLGDAITYMKKLQARLHTLEEQAEDNKKTGSAIQVKRSVIFTDHHDDDDSSNSNNQTLPEIEVRVSRKDVLIKIQCEKHNGRASTSTILGKLETLNLTVQSSNLLPFGNNIADLTIVAQMNEENCVTAKDLLGSIRNALIINNN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03552 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 196 IPR036638 GO:0046983
Vivi2g03552 315 Coils Coil 180 200 - -
Vivi2g03552 315 PANTHER BHLH TRANSCRIPTION FACTOR 23 310 - -
Vivi2g03552 315 Pfam Helix-loop-helix DNA-binding domain 138 184 IPR011598 GO:0046983
Vivi2g03552 315 SMART finulus 140 189 IPR011598 GO:0046983
Vivi2g03552 315 Gene3D - 125 200 IPR036638 GO:0046983
Vivi2g03552 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 183 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03552 Vivi-Chr2 143513618 143515620 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03552 76 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.408 8.46e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g03552 HLH 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03552 - - vvo:131646947 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03552 2 143513618 143515620 Vivi2g03552 2 143513618 143515620 ECH
Vivi2g03552 2 143513618 143515620 Vivi1g02664 1 56601249 56602986 PCT