Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03539 ATGGCTCTTATTAACAATAATCAAGATTCCAATAACTCACACCTCCACCTTGTGCTAGGTTTATCCTTAACCACTCCAAACGAAACCACCACCACAACCACCACCACCGCCACCACCGTGAATCCCTACTCCTCCAACGAGCCATCCTTAACGTTGGGACTCTCCGCTGAGAGTTATAATCCTCCCAAAAATAAAACCTATGGCGAGGAACTTTGTAGACAAAATTCTTCACCTCACAGCGTTACTGTTTCGTCGTTCTCAAATGGGAGAATACTTCACGTGAAAAGGGAGAGAGACGAAGAAGAAGATGCAGTAGAAGAAGAAGAGAGAGTTTCTTCGAGAGTTATTAGCGACGAAGATGAAGATGGAACAAACACCAGAAAGAAACTTAGACTCACCAAAGAACAATCTCTATTACTTGAAGAAAGTTTCAAATTACACAGCACTCTCAATCCTAAACAAAAACAAGCTTTAGCGAAACAATTGAGTCTAAGGCCACGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAAACAGAGGTAGACTGTGAGTTTTTGAAGAAATGTTGTGAAACATTAACAGATGAAAATAGGAGGCTAAAGAAAGAGCTTCAAGAGCTGAAGGCATTGAAACTATCTGCACAACCTTTATACATGCCTATGCCAGCAGCTACTCTCTCCATCTGCCCGTCCTGCGACCGGCTCGGCGGCCGTGTCGCAGAAGGTGGTGGGTCAAATAAGAAGATTATCACTGCTTTTACTATGGCTCCTAATTCTCATTTTTACAATCCTTTTAATAATCCTTCTGCTGCATGTTGA 837 0.4277 MALINNNQDSNNSHLHLVLGLSLTTPNETTTTTTTTATTVNPYSSNEPSLTLGLSAESYNPPKNKTYGEELCRQNSSPHSVTVSSFSNGRILHVKRERDEEEDAVEEEERVSSRVISDEDEDGTNTRKKLRLTKEQSLLLEESFKLHSTLNPKQKQALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLSAQPLYMPMPAATLSICPSCDRLGGRVAEGGGSNKKIITAFTMAPNSHFYNPFNNPSAAC 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03539 278 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Vivi2g03539 278 Pfam Homeobox associated leucine zipper 183 217 IPR003106 GO:0006355|GO:0043565
Vivi2g03539 278 SMART halz 183 226 IPR003106 GO:0006355|GO:0043565
Vivi2g03539 278 MobiDBLite consensus disorder prediction 95 129 - -
Vivi2g03539 278 SMART HOX_1 125 187 IPR001356 GO:0003677
Vivi2g03539 278 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Vivi2g03539 278 Coils Coil 91 111 - -
Vivi2g03539 278 FunFam Homeobox-leucine zipper protein 18 112 188 - -
Vivi2g03539 278 SUPERFAMILY Homeodomain-like 118 184 IPR009057 -
Vivi2g03539 278 MobiDBLite consensus disorder prediction 108 129 - -
Vivi2g03539 278 Gene3D - 120 188 - -
Vivi2g03539 278 Coils Coil 189 219 - -
Vivi2g03539 278 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Vivi2g03539 278 CDD homeodomain 127 184 IPR001356 GO:0003677
Vivi2g03539 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 19 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03539 Vivi-Chr2 143190001 143191566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03539 9 278 Homeobox Transcription Factor Family AT4G37790 60.357 5.54e-92 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi2g03539 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03539 K09338 - gmx:100795135 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03539 2 143190001 143191566 Vivi1g02683 1 57252121 57253524 PCT