Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03536 ATGGGAAGAGCTCCTTGCTGTGACAAAGCCAATGTCAAAAAAGGTCCATGGTCACCTGAAGAAGATGCCAAACTCAAGTCTTACATAGAGCAGAATGGAACTGGTGGAAATTGGATAGCCCTTCCTCAGAAGATAGGACTTAAGAGATGTGGAAAAAGCTGTCGTCTTAGATGGTTAAATTATCTTAGACCAAATATCAAACATGGTGGTTTCTCTGAGGAAGAAGATGATATCATCTGTAGTCTCTATGTTAGTATTGGAAGCAGGTGGTCTATCATAGCAGCGCAGTTACCTGGACGAACGGATAACGATATAAAGAACTACTGGAACACTAGGCTGAAGAAGAAGCTTCTTGGAAAACAAAGGAAGGAGCAACAAGCTCAAGCTCAACGGGCTCGCCGAGTTAGCAACATGAAACAAGAGATGAAAAGAGAAGATCATCAGAATATGATGGTAGCAGCAGCATCAGCAGCATCAGCAGCAGCAGCTTCTGGTGTTAATACTATGAGTAGTACTACTCCTTATTGGCCTGTAGAGTATTCTTCTATTCATCCCATGCCAGTTTCAAATTCATCCATAATTGACTATGATCTCAACAATCAAACATCCTTCACAAGCATGCTTCATCCTCCAACCATAATGAACATGACATCAAACCCTTTATCCATGGTGAGTAATGCAAACAATATATTTCAAGGGTTCGAAAATTTTCCAAGTGATTTAAGTGATCAGCTTGTATGTGAGAACCAACAAGTAATTATGAATCGAACAATTGATGGTTTTTATGGAATGGAATCCATTGATCATATGAGCAATGGTGGTGGTAGCACCATCACAACAACAACTTCAACAGAAAGTACTAGTTGGGGAGATATGAACTCTCTGGTTTATTCACCTTTGGTTTCTGATTATGAAGGATCAATTCTTCCTCAAGCTGTTTTTGAAGAGTCTAGGTATTTTGGAATGCAAATGCAATAA 978 0.3957 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDDIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQAQRARRVSNMKQEMKREDHQNMMVAAASAASAAAASGVNTMSSTTPYWPVEYSSIHPMPVSNSSIIDYDLNNQTSFTSMLHPPTIMNMTSNPLSMVSNANNIFQGFENFPSDLSDQLVCENQQVIMNRTIDGFYGMESIDHMSNGGGSTITTTTSTESTSWGDMNSLVYSPLVSDYEGSILPQAVFEESRYFGMQMQ 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03536 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vivi2g03536 325 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vivi2g03536 325 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vivi2g03536 325 FunFam Transcription factor RAX3 70 148 - -
Vivi2g03536 325 CDD SANT 71 113 IPR001005 -
Vivi2g03536 325 SMART sant 13 64 IPR001005 -
Vivi2g03536 325 SMART sant 67 115 IPR001005 -
Vivi2g03536 325 PANTHER OS09G0431300 PROTEIN 1 264 - -
Vivi2g03536 325 Gene3D - 7 68 - -
Vivi2g03536 325 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vivi2g03536 325 FunFam Transcription factor RAX3 7 68 - -
Vivi2g03536 325 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vivi2g03536 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vivi2g03536 325 CDD SANT 16 62 IPR001005 -
Vivi2g03536 325 Gene3D - 70 148 - -
Vivi2g03536 325 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vivi2g03536 325 MobiDBLite consensus disorder prediction 119 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03536 Vivi-Chr2 143095717 143097297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03536 1 298 MYB Transcription Factor Family AT3G49690 47.720 1.28e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g03536 Myb_DNA-binding 3.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03536 K09422 - gmx:106795158 368.622