Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03532 ATGAAGTCCATAGAAAATTTTGATTCCATTAACGTAAACAATCAAAATAGTAACATGTTTGGTGTCTCTTTCTCTCCTTCATATGCTGCTGCTGAAGCAGTTCCAACGAGCTTCTGTTATCATCCTACACCTCTTCATAACTATGGCTTTTACTATGGACTTGAAAGTGAACATGTTGGATTGTATTCAGCCTTGCCTTTCATGCCTGATGGATCCATATATGGTGTTGAAGCTTTGAGTAGATCACAATCACCAGCAATGAGTATTCATCCATATGAATGTAGTAGTAGCAAAGAATCAATGCAACTCAACATGGATGGTTTTTTGTATAACCAAACTTTATGCCATAAACAAAACATTACTCCAAATAACCTAAATCATGTACAAGAGAATATGAACCTTTTGGGAAGTTTAGCGGAGCATCAGGCGCAACAACTTTCGTATTACGCCACATTACGAAACGATAATATGATGTTAGAATTAGAAGGGTTGATGAAAAATCAGGTGAAAGATAGTGTCCAGGTCTCAAATATAGTTGAGGATGAAGTTTTTGATGTGAAAAGATGGGTCTCAAGGGATATTAATGGTGTTAGTTCTAACTCACAATCAAGCTGTGTTACTAGTTCACAAGAAACATCACCTATTGATTCGGTTTCTATTGATACTATGAAAAGGAAGAATCAGAATCAAACTTTAGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGACATAGGTGGACGGGTAGATATGAAGCGCATCTATGGGATAATAGTTGTAAGAAAGAAGGTCAAGCTAGGAAAGGAAAGCAAGGTGGTTATGACATGGAAGAAAAAGCTGCAAGAGCGTATGATATGGCTGCACTCAAGTATTGGGGTCCCTCCACTCGTATAAATTTCCCACTTGAAAATTATCAAAAAGAACTTGATGTAATGAAGAAAATGACTAGACAAGAATACGTTGCTCATTTGAGAAGGTACATCAATATTTTGAAAAGCAGTGGATTCTCAAGAGGAGCTTCCATGTATAGAGGAGTAACAAGCAGACACCATCAACATGGAAGGTGGCAAGCTAGAATAGGTAGAGTTGCTGGAAATAAAGATCTCTATCTTGGAACTTTCACTACTCAAGAGGAAGCTGGTGAAGCCTATGATATAGCAGCTATAAAATTCAGAGGAGAAAATGCTGTGACAAATTTTGATATAACAAGATATGATGTGGAAAAAATTATAGCAAACAGTAACCTTCTTAGCAGTGAAGAAGCTAGAAGAAGCAAAAAAGTTGATGATGATGATGGAATAATTAACATTGAAGAAGCGATTAATCCAATGCATAAGAGATGCAAAATGCAATCATTTTCGATAGGTTTAGATGATATTTATCGTCAAGAAATAGAGGAATATTCGAATAGAGTATTGAATATGTCGAATGCTTCTTCGGTTGTGACAAGCTTAAGTAACTCAAGAGAAGAAAGTCCTGAATATAGAACAAGCATGCCATTGCCAGTACTCTTTGGAATGGATTCAACAGCTTCAATGGCTTCATTTTCTAATTTGCCTCAGATGCCATTGTCGGTTTTCGCTGGGTGGGCCGATGCATAA 1602 0.3689 MKSIENFDSINVNNQNSNMFGVSFSPSYAAAEAVPTSFCYHPTPLHNYGFYYGLESEHVGLYSALPFMPDGSIYGVEALSRSQSPAMSIHPYECSSSKESMQLNMDGFLYNQTLCHKQNITPNNLNHVQENMNLLGSLAEHQAQQLSYYATLRNDNMMLELEGLMKNQVKDSVQVSNIVEDEVFDVKRWVSRDINGVSSNSQSSCVTSSQETSPIDSVSIDTMKRKNQNQTLGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQARKGKQGGYDMEEKAARAYDMAALKYWGPSTRINFPLENYQKELDVMKKMTRQEYVAHLRRYINILKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFTTQEEAGEAYDIAAIKFRGENAVTNFDITRYDVEKIIANSNLLSSEEARRSKKVDDDDGIINIEEAINPMHKRCKMQSFSIGLDDIYRQEIEEYSNRVLNMSNASSVVTSLSNSREESPEYRTSMPLPVLFGMDSTASMASFSNLPQMPLSVFAGWADA 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03532 533 ProSiteProfiles AP2/ERF domain profile. 238 301 IPR001471 GO:0003700|GO:0006355
Vivi2g03532 533 SUPERFAMILY DNA-binding domain 341 402 IPR016177 GO:0003677
Vivi2g03532 533 CDD AP2 237 301 IPR001471 GO:0003700|GO:0006355
Vivi2g03532 533 SMART rav1_2 342 407 IPR001471 GO:0003700|GO:0006355
Vivi2g03532 533 SMART rav1_2 238 307 IPR001471 GO:0003700|GO:0006355
Vivi2g03532 533 Gene3D AP2/ERF domain 237 303 IPR036955 GO:0003700|GO:0006355
Vivi2g03532 533 Gene3D AP2/ERF domain 342 403 IPR036955 GO:0003700|GO:0006355
Vivi2g03532 533 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 184 428 - -
Vivi2g03532 533 FunFam AP2-like ethylene-responsive transcription factor ANT 237 303 - -
Vivi2g03532 533 FunFam AP2-like ethylene-responsive transcription factor 341 403 - -
Vivi2g03532 533 Pfam AP2 domain 238 293 IPR001471 GO:0003700|GO:0006355
Vivi2g03532 533 PRINTS Ethylene responsive element binding protein signature 383 403 IPR001471 GO:0003700|GO:0006355
Vivi2g03532 533 PRINTS Ethylene responsive element binding protein signature 239 250 IPR001471 GO:0003700|GO:0006355
Vivi2g03532 533 CDD AP2 341 403 IPR001471 GO:0003700|GO:0006355
Vivi2g03532 533 ProSiteProfiles AP2/ERF domain profile. 342 401 IPR001471 GO:0003700|GO:0006355
Vivi2g03532 533 SUPERFAMILY DNA-binding domain 237 303 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03532 Vivi-Chr2 142867947 142871292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03532 47 533 AP2-EREBP Transcription Factor Family AT4G37750 43.333 1.78e-115 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi2g03532 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03532 K09285 - gmx:100792451 538.88