Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03504 ATGCCTATGTATCAGCCTTCTATGGTTGTGGGTTTTGAGGGTGGTGGTGATGGTCAGATTCTAGATCTGGACACCGCCGTGAAAGACGGTGTTTTGGGTGGTGGTGGTGGTGGTGGTGGGGTTGTTGGAAGTGGTGTTGAGAAATTAGATCTGAGAAAAATGATTCAAGAGCTGGAGTTATGTGAAGTTCCAAGTGTTTTCATTTGTCCAATTTCTCTTGAACCAATGCAAGACCCTGTTACTCTTTGCACTGGACAAACCTACGAGAGGAACAACATTCTTAAATGGTTCAACCTAGGACACTTGACTTGTCCCACTACTATGCAGGAGCTTTGGGATGATTCCATCACTCCAAACACAACTCTCTACAGACTTATATACACTTGGTTCTCTCAGAAGTATTTGTTGATGAAGAAACGGTCTGAGGATGTTCAAGGAAGAGCTTCTGAGCTTGTGGAGACACTCAAGAAGGTGAAGGGTCAGGCTCGTGTTCATGCTTTGAAGGAGCTTCATCAGGTTGTGGCTTTTCATGCTACTGCTCGTAAGTCTGTGATTGATGAAGGTGGTGTTTCTGTTTTGTGTTGTTTACTTGGTCCTTTTACTTCATATGCTGTTGGTTCAGAAGTTATTGGTATTCTTGTTAGTTTGACACTTGATTCTGAGTCCAAGAAGAATCTTATGCAACCTGCGAAGATTTCGTTGATGGTTGATATCTTGAATGAGGGTTCAATTGAGACCAAAATCAATTGCACGCGGTTGATTGAATCGCTGATCGAGGAAAAGGATTTTCGGTCTGAGATTATCTCAAGCCATAGTCTGTTGGTTGGTTTGATGAGGCTTGTTAAGGATAAGAGACATAGCAATGGAATCTGTCCTGGGTTAAGCCTCCTGAAAACAGTGTGTTTCTATAAGGAAGTTAAGATTTTGTTAGTTAGCATTGGTGCTGTTTCGCAATTAGTCGAATTGTTATCTGGTATGGACCATGATTGTTTGGAACTAGCCCTTTGTGTTTTGGATTCGTTGTCGTCGATACCTGAAGGCAGAGTCGCGTTGAGGGATTGTGTCAACACGATACCTATCATGGTGAGATTTTTGATGAGGATCTCGGAAACCTGCACTCAGTACGCATTGTCAATTTTGTGGTCTGTTTGCAAGCTTGCGCCCGAGGAGTGTTCGGCGATTGCCATCGACGCAGGGCTTGCTGCGAAACTTCTTCTAGTGATTCAAAGTGGTTGCAATCCGATATTAAAACAACAATCCGCCGAGCTTTTGAAACTGTGTAGTCTGAATTATTCAGATACTATCTTCATTTCCAAGTGCAAGCTTACAAGAACAATCCAATGA 1344 0.4278 MPMYQPSMVVGFEGGGDGQILDLDTAVKDGVLGGGGGGGGVVGSGVEKLDLRKMIQELELCEVPSVFICPISLEPMQDPVTLCTGQTYERNNILKWFNLGHLTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELVETLKKVKGQARVHALKELHQVVAFHATARKSVIDEGGVSVLCCLLGPFTSYAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKINCTRLIESLIEEKDFRSEIISSHSLLVGLMRLVKDKRHSNGICPGLSLLKTVCFYKEVKILLVSIGAVSQLVELLSGMDHDCLELALCVLDSLSSIPEGRVALRDCVNTIPIMVRFLMRISETCTQYALSILWSVCKLAPEECSAIAIDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03504 447 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Vivi2g03504 447 SUPERFAMILY RING/U-box 58 133 - -
Vivi2g03504 447 Gene3D - 136 440 IPR011989 -
Vivi2g03504 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 135 IPR013083 -
Vivi2g03504 447 PANTHER WDSAM1 PROTEIN 56 433 IPR045185 GO:0061630
Vivi2g03504 447 CDD RING-Ubox_PUB 64 114 IPR045210 -
Vivi2g03504 447 SUPERFAMILY ARM repeat 151 432 IPR016024 -
Vivi2g03504 447 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
Vivi2g03504 447 Pfam U-box domain 63 133 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03504 Vivi-Chr2 142139298 142141794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03504 1 447 U-box Gene Family AT3G49810 73.778 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03504 - - gmx:100779827 774.622