Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03479 ATGGATACGTTGTTTAGACTTGTTAGTTTTCAACACCAACACCAACCTCATCAATCTCTCAACTCCACCACCACAACAACAACAACATCTAGTAGCTCTCGATCCTCCAAACAAAACTATCACCAATATTACCCTCCACAACAAGAAGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTTTCCTCATCTTCTTCCAAACACTACTATCCTTATAATCAACAACCACAAACTTCAATCACTACTAACACCTCCACTCCTACACCCACACCCACACCCCCACCCCCACCACCTCCAACTGATCATTTCAACTTTGAATTAACCGGAAAGTGGGCCCACAACATCCTCCTCGAAACAGCACGTGCCATAGCAGAAAAAAATAGCAATCGTTTACAACAACTCATGTGGATGCTTAACGAACTAAGCTCCCCTTACGGCGACACAGAACAAAAACTCTCTGCCTATTTTCTCCAAGCTTTATTCTCTCGAATGACTGAAGCCGGCACCCGAACCTTCCGAACCCTAGCTTCGGCTTCGGAGAAAACTTGCTCATTCGAATCAACAAGAAAAACGGTTTTGAAATTTCAAGAAGTTAGTCCATGGACAACTTTCGGTCATGTAGCTTGCAATGGCGCAATCTTAGAAGCATTAGAAGGAGATTCAAAGTTGCATATAATTGATATTAGTAACACTTATTGCACTCAATGGCCAACGCTTTTCGAAGCGTTGGCGACTCGAACCGACGATACTCCGCACCTCCGTTTAACCACTGTTGTAACTGCTAGTGGTTCTGTTCAGAAAGTCATGAAGGAAATTGGTGCAAGATTGGAGAAATTCGCTAGACTAATGGGAGTTCCGTTTAAGTTCAACGTTATTCATCACGCCGGTGACCTTTCCGATTTGGATTTCTCCGGTTTAGATATTAAGGAGGATGAAGCGTTGGCGGTTAATTGTGTTAATACTTTGCATTCGATAAGCGTTGGTGTTGGTGATGGTAACAGTAACGGTAACAGTAACCGTAACCGTCGAGACGCGTTGATAGGTTCGTTGATGAGGTTGCGTCCGAGGATAGTTACGGTGGTTGAAGAAGAAGCTGATTTGGATTTCGGTTTCGAAGGCTTTGAATTCGTGAGAGGTTTTGAAGAGTGTTTGAGATGGTTTAGGGTTTATTTCGAGGCATTGGAAGAGAGTTTTCCGAAGACGAGTAACGAGCGTTTGATGCTGGAGAGGGAAGCGGGGAGAGGGATAGTTGATTTGGTGGCGTGTGCTCCGGCGGAGTCGATGGAACGGAGGGAGACGGCGGTGCGGTGGTCGCAGCGTTTGCATGGTGGAGGGTTTAATACGGTGGCGTTTAGTGATGAAGTTAGTGATGATGTGAGAGCGTTGTTGAGAAGGTATAAGGAAGGGTGGTCGATGACGCCGTGTAGCGACGCCGGAATATTCCTGACGTGGAGGGAACAACCGGTGGTGTGGGCCAGTGCATGGAGGCCTTGA 1497 0.4589 MDTLFRLVSFQHQHQPHQSLNSTTTTTTTSSSSRSSKQNYHQYYPPQQEEECFNFFMDEEDLSSSSSKHYYPYNQQPQTSITTNTSTPTPTPTPPPPPPPTDHFNFELTGKWAHNILLETARAIAEKNSNRLQQLMWMLNELSSPYGDTEQKLSAYFLQALFSRMTEAGTRTFRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVACNGAILEALEGDSKLHIIDISNTYCTQWPTLFEALATRTDDTPHLRLTTVVTASGSVQKVMKEIGARLEKFARLMGVPFKFNVIHHAGDLSDLDFSGLDIKEDEALAVNCVNTLHSISVGVGDGNSNGNSNRNRRDALIGSLMRLRPRIVTVVEEEADLDFGFEGFEFVRGFEECLRWFRVYFEALEESFPKTSNERLMLEREAGRGIVDLVACAPAESMERRETAVRWSQRLHGGGFNTVAFSDEVSDDVRALLRRYKEGWSMTPCSDAGIFLTWREQPVVWASAWRP 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03479 498 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 80 486 IPR005202 -
Vivi2g03479 498 MobiDBLite consensus disorder prediction 8 41 - -
Vivi2g03479 498 ProSiteProfiles GRAS family profile. 104 497 IPR005202 -
Vivi2g03479 498 Pfam GRAS domain family 115 497 IPR005202 -
Vivi2g03479 498 MobiDBLite consensus disorder prediction 66 87 - -
Vivi2g03479 498 MobiDBLite consensus disorder prediction 66 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03479 Vivi-Chr2 141763399 141765468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03479 1 498 GRAS Transcription Factor Family AT4G37650 58.824 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi2g03479 GRAS 4e-105 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03479 - - gmx:100820459 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03479 2 141763399 141765468 Vivi2g03479 2 141763399 141765468 ECH
Vivi2g03479 2 141763399 141765468 Vivi1g02728 1 58577566 58579568 PCT