Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi2g03462 | ATGGCTAACATGGATGGCAAATCACTCCTGAGTAGTAAGAAATCCATTCCCATACCACCTCCTTCGCGTCAATCAGCCGCAACAGGTTATCCTTGTGAGTATGTGGTGATGAATAATTTAGCACCGAGAGGGCGAAGCAGTCGTGTCCCTACTGCAACAAAAGATTTGTGGGAGCGTCTTTTCAATGAAGGTTATAAAGCCGATGTTCGCATTAATACTGATAACGGTGGCATTGTTTATGCTCATTCTAACATTATTGGGATGGCTTCTCCTGTATTGGGAGGTATGCTGAAGCAAGCAAATCGTTCCAAACGATGGCGATCAATCTCAATTTTTGGGGTTCCACATGATGCAGTACGAGTTTTTATTCGCTTCTTGTACTCTTCCTGTTACGAGAACGAAGAAATGAAGGAATTTGTCCTACATTTGTTGGTGCTGTCACATGTATATGCGGTCCCTCACTTGAAGCGTGAATGTGAACAGAAGCTAGAATTGGGTTTACTCACCATAGATAATGTAGTGGATGTATTTCAACTTGCATTATTGTGTGATGCACCACGGCTCAGTCTCGTTTGTCATCGTAAAATACTAAAAAACTTCAAAACTGTTTCGGAGTCAGAAGGATGGAAAGCAATGAAGCAGAGCCACCCGATTCTAGAAAAAGAACTTCTGGAGTCAATGATTGAAGAAGAAAATAGTAAGAAGGAGAGGATCAGAAAAATGAATGAAAAAGAGGTCTATCTGCAGTTATACGATGCAATGGAAGCTCTTGTTCACATATGTAGAGATGGTTGTCGAACTATTGGCCCTCATGATAAAGACTTCAAAGCAAACCAACAACCGTGTAGGTATACATCTTGCAAAGGGCTAGAACTTCTTGTTCGCCATTTTGCTGGTTGCAAGTTGAGAGCCCCAGGAGGTTGTGCCCATTGCAAAAGGATGTGGCAACTGTTGGAGCTGCATTCTCGACTATGTGCTGATCCAAATTCATGTAGAGTGCCTCTGTGCAGGAACTTTAGACAGAGACTAGCAAAACAAAGCAAGAAAGACGAAATTAGATGGACAATATTGGTTGAGAAGATCTTGAAAACAAGAGGAATTGGGATTGCACCATGCTTTCGGCCACTATGA | 1131 | 0.4209 | MANMDGKSLLSSKKSIPIPPPSRQSAATGYPCEYVVMNNLAPRGRSSRVPTATKDLWERLFNEGYKADVRINTDNGGIVYAHSNIIGMASPVLGGMLKQANRSKRWRSISIFGVPHDAVRVFIRFLYSSCYENEEMKEFVLHLLVLSHVYAVPHLKRECEQKLELGLLTIDNVVDVFQLALLCDAPRLSLVCHRKILKNFKTVSESEGWKAMKQSHPILEKELLESMIEEENSKKERIRKMNEKEVYLQLYDAMEALVHICRDGCRTIGPHDKDFKANQQPCRYTSCKGLELLVRHFAGCKLRAPGGCAHCKRMWQLLELHSRLCADPNSCRVPLCRNFRQRLAKQSKKDEIRWTILVEKILKTRGIGIAPCFRPL | 376 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi2g03462 | 376 | ProSiteProfiles | Zinc finger TAZ-type profile. | 241 | 339 | IPR000197 | - | |
| Vivi2g03462 | 376 | Pfam | TAZ zinc finger | 252 | 336 | IPR000197 | - | |
| Vivi2g03462 | 376 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Vivi2g03462 | 376 | Pfam | BTB/POZ domain | 59 | 163 | IPR000210 | GO:0005515 | |
| Vivi2g03462 | 376 | PANTHER | BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED | 43 | 368 | IPR044513 | - | |
| Vivi2g03462 | 376 | SMART | TAZ_2 | 244 | 337 | IPR000197 | - | |
| Vivi2g03462 | 376 | ProSiteProfiles | BTB domain profile. | 67 | 135 | IPR000210 | GO:0005515 | |
| Vivi2g03462 | 376 | Gene3D | Potassium Channel Kv1.1; Chain A | 45 | 167 | IPR011333 | - | |
| Vivi2g03462 | 376 | SMART | BTB_4 | 67 | 167 | IPR000210 | GO:0005515 | |
| Vivi2g03462 | 376 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Vivi2g03462 | 376 | CDD | BACK | 169 | 229 | - | - | |
| Vivi2g03462 | 376 | SUPERFAMILY | TAZ domain | 244 | 344 | IPR035898 | - | |
| Vivi2g03462 | 376 | FunFam | BTB/POZ and TAZ domain-containing protein 2 | 169 | 239 | - | - | |
| Vivi2g03462 | 376 | FunFam | BTB/POZ and TAZ domain-containing protein 2 | 241 | 366 | - | - | |
| Vivi2g03462 | 376 | Coils | Coil | 221 | 244 | - | - | |
| Vivi2g03462 | 376 | SUPERFAMILY | POZ domain | 48 | 163 | IPR011333 | - | |
| Vivi2g03462 | 376 | Gene3D | TAZ domain | 242 | 364 | IPR035898 | - | |
| Vivi2g03462 | 376 | Gene3D | - | 168 | 241 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi2g03462 | Vivi-Chr2 | 141335718 | 141341469 | Tandem |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | TAZ | Vivi2g03462 | BTB | 3.2e-10 | CL0033 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi2g03462 | - | - | lja:Lj2g3v1968190.1 | 595.89 |