Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03448 ATGAGTTGTAACGGTTGCCGTGTCCTTAGAAAGGGTTGTAGCGAGTCTTGTATCTTACGCCCTTGTATTCAATGGATCGATACCCCTGAATCACAAGGCTATGCCACTGTCTTTGTTGCCAAGTTTTTCGGGCGCGCAGACCTCATGTCTTTCATTTCCAACGTCCCTCAACCACAAAGACCCGCTTTGTTTCAATCTCTGTTGTTTGAAGCGTGTGGAAGAACCGTTAACCCCGTTAACGGTGCCGTTGGACTTTTATGGACAGGAAACTGGCACGTGTGTCAAGCGGCAGTTGAAACCGTTCTCCGCGGCGGAACCCTTGGACCTATACCCGAGCTTCTCGGTTTAGACGACGCTTCCGAAGGTGAAGTCACATGTAACGACGCGCGGAAGATCCGAGATCCGAACTCGAGTTTGCGGTTTTTGAGTTCCGGTGGTAAACGCAAGCGATTGAGTGAAGCTGCGAAGGTTCACACACAGACGACGACTGATCTTAATCTCGCGTTGACCAACGGTTGCCGAAGGGAGGTTCGCCGGCAGGGAACACCGTCGTTGAATTCTGAGGAATCTGTGACGACGACGACGTGTTTGGAGAGTATGAACGGAGATGAGTACGTTCACGACGGAGACCGGAAAGTTCTTAACCTTTTTGTTTGA 657 0.5068 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGYATVFVAKFFGRADLMSFISNVPQPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLGPIPELLGLDDASEGEVTCNDARKIRDPNSSLRFLSSGGKRKRLSEAAKVHTQTTTDLNLALTNGCRREVRRQGTPSLNSEESVTTTTCLESMNGDEYVHDGDRKVLNLFV 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03448 218 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vivi2g03448 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 216 - -
Vivi2g03448 218 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03448 Vivi-Chr2 140914608 140915887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03448 1 218 AS2 family AT3G49940 54.762 3.79e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi2g03448 LOB 2.7e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03448 2 140914608 140915887 Vivi1g02743 1 58980864 58982210 ECH
Vivi2g03448 2 140914608 140915887 Vivi2g03448 2 140914608 140915887 ECH
Vivi2g03448 2 140914608 140915887 Vivi1g03939 1 83081604 83082457 PCT
Vivi1g02743 1 58980864 58982210 Vivi2g03448 2 140914608 140915887 PCT