Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03447 ATGCCGCCTATTCCTTTCTCTAGTGGTGTTAATGCAGCAATATTTCATACATCCTTCATAGCTCTAGCCAGTGAAAACTTGTCCAGGCTTCATAATTTTTCTGGCTCCGCCAAGAAGGACAAACAAAACTCACGTGACGTTGCTCTTAAGCCAGACTTCTCATCTACTCGCATGGAGAATTTTCCTAATGTCTCTACCTATTTCCAACGTCTCAAACAACTTTTTGATCAGTTGAAGAACGTTGAAGCACCTGTTAGGAATCACAACTTAGTTCTTCAACTGGTGTTTGGCCTTTTTGAGTTGTATCGTGGAGTTACTACCCTAATATGCCAAAGGAATCCACTGCCATCATTCTTTCAGGCTCGCTCCATGCTCACCTTAGAGGAATCCGGTCCGAAAAAATGCACAACACTAGTTCTCACACTGCCTTGTATATTGCTGCTTAATGTGTATCTTCACATGCATGCTCCCTGCACTGAGCACGTGCTTACACTGAAACCCATCATGTGTTACGTTCAGGGCACCTTACAATATGAATTTCCCTTATCCAATAATAACTCTCATCACAACTCCAACAAAACCAATTGCATGGAACACTTACTCGTTCAATGCGCCAACGCCATCGAAACCAACAATGCAACACAAGCACAACAAATCCTTTGGGTCCTTAACAACACAACACCCCAAGAAGGTGACTCCAATCAACGCTTAGCCGCAAGCTTCATTCGAGCTCTAACAACCCGAGCATCGAAAACCAGTAGCTGCAAAATGCTAGAAGAACAACTTACAGAAACTGCAAACACAAACAGTTATAACATTCTTGACAATAATAACAACCTCGCCATACAAACACACAAATTCTCCGTCATTGAACTAGCCAGCTTCGTCGATTTAACACCATGGCATCGCTTCGGTTACACAGCAGCAAACTCCGCCATTCTAGAAGCCACCAAAGGTTTTTCTGTTATTCACATTGTTGATTTGAGTTTAACACATTGCATGCAGATTCCTACACTTATCGACGCAATTGCTAATCGCGACGATGTTCCTCCTTCAATCAAGCTCACCGTTGCGGTTAGGAATAGGAATAATGTTCATATTCCAATTCCACCTTTGCTCGACCTTTCTTACGACGAATTAGGTTCAAAACTGGTTAATTTTGCTAAATCAAGAAACGTGAGTATGGAATTCAAAGCAGTTTCTTCGACTTATGCAGACGGATTTGCTTCTTTGATCGAACACCTACGAGTGCAAGTCCAAGATTTAGTTTATAACAAAACTCATGAAGCATTGGTAATAAACTGTCACATGATGCTTCATTATATTCCAGAAGAAACTCTATATACGAATATGAATATGAATATGAATACGAAATCTTCTTCCCTTCGGTCGATGTTTCTAGAAGCTCTACGATGTTTAGAACCGACGATTGTCATTCTGGTCGATGAAGATGCGGATTTAACATCAGTTGATTTAGTGACTAGATTAAGGTCTGCATTTAACTATCTTTGGATTCCTTTCGACACGGTGGACACGTTTCTACCGCGAGGGAGTAAACAAAGGCATTGGTATGAATCAGATGTTTGTTGGAAGATTGAGAATGTGATAGCATATGAAGGGGTTCAAAGAGTTGAGAGAGTTGAGGATAAAAGCAAGTGGGAGCAAAGAATGAGAAATGCGCATTTTCAAGGGGTTTGTTTTAGTGAAGATACGGTTATGGAGGTTAAGGGGATGATTGATGAACATGCAGTTGGGTGGGGATTGAAGAAAGAAGATGAGTTTCTTTTGCTTACTTGGAAAGGACACAATGTTATCTTTGCTTCTGCTTGGTTACCTTCTTGA 1842 0.4093 MPPIPFSSGVNAAIFHTSFIALASENLSRLHNFSGSAKKDKQNSRDVALKPDFSSTRMENFPNVSTYFQRLKQLFDQLKNVEAPVRNHNLVLQLVFGLFELYRGVTTLICQRNPLPSFFQARSMLTLEESGPKKCTTLVLTLPCILLLNVYLHMHAPCTEHVLTLKPIMCYVQGTLQYEFPLSNNNSHHNSNKTNCMEHLLVQCANAIETNNATQAQQILWVLNNTTPQEGDSNQRLAASFIRALTTRASKTSSCKMLEEQLTETANTNSYNILDNNNNLAIQTHKFSVIELASFVDLTPWHRFGYTAANSAILEATKGFSVIHIVDLSLTHCMQIPTLIDAIANRDDVPPSIKLTVAVRNRNNVHIPIPPLLDLSYDELGSKLVNFAKSRNVSMEFKAVSSTYADGFASLIEHLRVQVQDLVYNKTHEALVINCHMMLHYIPEETLYTNMNMNMNTKSSSLRSMFLEALRCLEPTIVILVDEDADLTSVDLVTRLRSAFNYLWIPFDTVDTFLPRGSKQRHWYESDVCWKIENVIAYEGVQRVERVEDKSKWEQRMRNAHFQGVCFSEDTVMEVKGMIDEHAVGWGLKKEDEFLLLTWKGHNVIFASAWLPS 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03447 613 ProSiteProfiles GRAS family profile. 188 611 IPR005202 -
Vivi2g03447 613 Pfam gag-polypeptide of LTR copia-type 40 130 - -
Vivi2g03447 613 Pfam GRAS domain family 197 610 IPR005202 -
Vivi2g03447 613 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 186 600 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03447 Vivi-Chr2 140871465 140889129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03447 195 612 GRAS Transcription Factor Family AT3G49950 55.450 9.22e-160 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi2g03447 GRAS 8.1e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03447 - - vvo:131650176 1197.19