Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03416 ATGACCAACGCTTTCTCTCTCGTAACACAACAATACAAAGCTCTACTGAAGAAAAACCTACTCCTCTCATGGCGAAGCAAACGTGCCATTCTTCTCCAACTACTCTCTCCGATCCTCTTCATTTTCCTCATCTTCGCCATCGACAAAGCAACGAAAGCACAAACTTCCTCAACTTCACCATACAAATCCGTAACAGACCCTTCCTCACTACCTTCCCCGCCGATTCCACCTTGCGAGGATAAATTCTCCGTCAAACTTCCTTGTTACGATTTTGCATGGAGTGGTGATAACAATCCAAAGTTTCACACCATTGTCAGCAGAATTATTAGTAATAATCCTGGCAGGGCTATTCCGATTTCTAAAGTGAAGTCGTTTCGCGATAAGGCGGAGGTTGATAAGTGGCTTTTCGATAATCCTATGCAATGTGCTGGTGCAATTCATTTTCGTGAAATGAATGCTAGTGTTATTAGTTATGGGATTCAGACTAATTCTACTAGTGTTCGGGAACGTGGAAGGTATGAAGATCCTACTTTTTCTTTTCAATTGCCTCTTCAGCTTGCTGCGGAACGTGAAATCGCCAGATTCCTTATTGGAGACCCGAGCTTTAAGTGGAATGTTTTTATGAAAGAATTCGCGCACCCAGCAACGAATCCTTCATCTGCTGTTGGAGTAATAGGTCCAGCGTTTTTTCTTGCAATTGCTATGTTTAATTTTGTTCTTCAGATAAGTTCTTTGGTCACAGAAAAAGAGCTTAAACTTCGCCAGGCAATGACTGTGATGGGGCTTTACGACACTGCATACTGGTTATCATGGCTAACTTGGGAAGCAGTTGTTACAGTTATATCATCTATTATCATAGTTCTCTCTGGCATGATGTTTCAGTTAGATCTCTTCTTGAAAAACAATTTTGCTGTTCTGTTCTTTTTGTTCTTCCTATTTGAACTCAACATGACTGGGCTGGCCTTCATGTTATCTGCTTTCATTAGTAAATCGTCTTCTGCAACATCAGTTGGCTTCTCCATATTTATTGTCGGCTTTGTGACTCAGACTGTGTCACAAGTAGGATTTCCTTATGCCAAAAACTACTCTGCTACTAAACGAAATTTGTGGTCACTATTTCCGCCTAATCCTTTTGCTCAAGGCCTGAAAATGCTTTCAGGTGCAGTTTCAAATAATGGTCTTAGCTGGAGTAAACGGGGAAAATGTTATGACGATGACTGTGTGATCACAATTAATGATATTTATAAATGGCATCTTGCCACATTCTTTCTGTGGTTCATTCTGGCCCTGTACTTTGACAATATAATCCCGAATGCAATGGGTGTGAGGAAATCCGTATTATACTTTCTAAATCCTCGTTATTGGACGGGAAACGGAAGACAAAAAGTGAAAGAGGGCGGGGTTTGTAGTTGCTTAATTTCAGCCCATCATGAAGATAATAGTACAGCAGATGATGAAGATGTCCTTGAGGAAGAAAATGCTGTGAAGTTGCAACAAACACAAGGCGTGGTTGACGCAAATGTTGCCGTTCAGATATATGGCCTTAAAAAGACTTATCCCGGTACTTGTAACATCGGTTGCTGCTGCAAATGCAAAAGAAGTGCACCTTATCACGCTCTTAAGGGCTTGTGGGTGAACTTTACAAAGGATCAGTTATTTTGTCTTTTAGGACCCAACGGAGCTGGAAAAACTACAGCTATTAATTGTTTGACAGGGATAACTCCAGTAACTGATGGAGATGCATTGATTTATGGACATTCGACCCGAAGCTCCACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTGTGTCCCCAGTTTGATATCTTATGGGATGCACTGTCTGGTCAAGAACACCTCGAACTCTTCGCTAGTATTAAAGGCCTTTCCCCAGCTTCTATAAAATCAATTACTCGGACATCATTGGCAGAGGTGAGACTCACGGATGCAGCCAGAGTAAGATCTGGAAGTTACAGCGGAGGAATGAAACGTCGTCTCAGTGTTGCAATTGCCCTTATTGGCGACCCTAAATTAGTCATTTTGGATGAACCGACCACCGGTATGGATCCAATAACAAGGAGGCATGTGTGGGACATAATTGAAAATGCAAAAAAAGGGCGTGCCATTATTCTCACAACACATTCTATGGAAGAAGCTGATATTCTAAGTGACCGCATAGGAATCATGGCAAAGGGAAAGCTCCGTTGCATCGGCACTTCAATCAGATTGAAGTCACGCTTTGGCACTGGTTTTATTGCAAATATTAGCTTCTACGGAAACAATAATGAAAGCAGTCGTGTAAATGGTGATGCAGGATCAACAGGACATCATGAGGCTGTGAAGCGATTCTTCAAGAATCGATTAGATGTAGTGCCGAAAGAGGAGAACAATAACTTCCTAACTTATGTGATTCCTCATGAAAGAGAGACTCTCCTGACAAACTTTTTTTCAGAGCTTCAAAATAGAGAACGAGAATTTGGGATATCTGACATCCAGCTTGGTCTAACAACTCTTGAAGAAGTTTTCTTGAATATTGCAAAGCAAGCAGAGCTGGAAAGTGCTACAGCTGAAGGGAGGCTAGTGACTTTGACCTTGACATCTGGAGAGTCTGTGGAGATTCCTATAGGAGCTAGATTTGTGGGAATTCCAGGGACAGAGTCTTCTGAGTACCCCACAGGTTTTATGGTAGAAGTATACTGGGAGCAGGATGACACTGGTGCCCTTTGTATCTCCGGCCACTCGCAGAAAGCTCCTATTCCTCAAAATATCCAACTACCTTCGTCTGCTACTGCGAGACAACGCCGGTCAGGGTCAGTTCATGGGGTGGTGATTGATCAGAGTCAAGTTAGTTCAGTTAACTTCCAGTGA 2868 0.4226 MTNAFSLVTQQYKALLKKNLLLSWRSKRAILLQLLSPILFIFLIFAIDKATKAQTSSTSPYKSVTDPSSLPSPPIPPCEDKFSVKLPCYDFAWSGDNNPKFHTIVSRIISNNPGRAIPISKVKSFRDKAEVDKWLFDNPMQCAGAIHFREMNASVISYGIQTNSTSVRERGRYEDPTFSFQLPLQLAAEREIARFLIGDPSFKWNVFMKEFAHPATNPSSAVGVIGPAFFLAIAMFNFVLQISSLVTEKELKLRQAMTVMGLYDTAYWLSWLTWEAVVTVISSIIIVLSGMMFQLDLFLKNNFAVLFFLFFLFELNMTGLAFMLSAFISKSSSATSVGFSIFIVGFVTQTVSQVGFPYAKNYSATKRNLWSLFPPNPFAQGLKMLSGAVSNNGLSWSKRGKCYDDDCVITINDIYKWHLATFFLWFILALYFDNIIPNAMGVRKSVLYFLNPRYWTGNGRQKVKEGGVCSCLISAHHEDNSTADDEDVLEEENAVKLQQTQGVVDANVAVQIYGLKKTYPGTCNIGCCCKCKRSAPYHALKGLWVNFTKDQLFCLLGPNGAGKTTAINCLTGITPVTDGDALIYGHSTRSSTGMSNIRKLIGVCPQFDILWDALSGQEHLELFASIKGLSPASIKSITRTSLAEVRLTDAARVRSGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKKGRAIILTTHSMEEADILSDRIGIMAKGKLRCIGTSIRLKSRFGTGFIANISFYGNNNESSRVNGDAGSTGHHEAVKRFFKNRLDVVPKEENNNFLTYVIPHERETLLTNFFSELQNREREFGISDIQLGLTTLEEVFLNIAKQAELESATAEGRLVTLTLTSGESVEIPIGARFVGIPGTESSEYPTGFMVEVYWEQDDTGALCISGHSQKAPIPQNIQLPSSATARQRRSGSVHGVVIDQSQVSSVNFQ 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03416 955 ProSitePatterns ABC transporters family signature. 658 672 IPR017871 GO:0005524|GO:0016887
Vivi2g03416 955 Pfam ABC-2 family transporter protein 28 431 IPR013525 GO:0016020|GO:0140359
Vivi2g03416 955 Pfam ABC transporter 541 685 IPR003439 GO:0005524
Vivi2g03416 955 Gene3D - 499 757 IPR027417 -
Vivi2g03416 955 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 510 756 IPR003439 GO:0005524
Vivi2g03416 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 535 738 IPR027417 -
Vivi2g03416 955 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 485 852 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vivi2g03416 955 CDD ABC_subfamily_A 510 744 - -
Vivi2g03416 955 SMART AAA_5 549 733 IPR003593 GO:0016887
Vivi2g03416 955 FunFam ABC transporter A family member 2 500 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03416 Vivi-Chr2 140228328 140233025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03416 553 755 Calmodulin-binding Proteins AT2G36910 23.810 2.16e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03416 - - gmx:100786538 1490.32