Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03405 ATGTCTCATCGTCAAAATCAAAACCAACAACAACCTCTGTTAGAAGACCAAGAAGACGAAACGGCGTACGACTCCTCCGACAAAATCGTCATTATCGGAGAAGACGAATCCGAATACGAAACAGACATCGACAACGGAGTTCGGACTCCGTCTTTTTCATGGAAGAAGCTCTGGCTATTCAGCGGTCCTGGTTTTCTAATGAGTATAGCTTTTCTCGATCCTGGAAACTTGGAGGGGGATCTTCAATCCGGTGCGATTGCTGGCTACTCGTTGTTGTGGTTGCTTATGTGGGCTACGGCTATGGGGCTTCTTATTCAGCTTTTGTCGGCCAGGTTGGGTGTGGCTACGGGGAGACATTTGGCTGAGCTTTGTAGAGAGGAGTATCCTAGTTGGGCTAGGATTGTTCTTTGGTTGATGACGGAGGTTGCGCTTATTGGGTCGGATATTCAAGAGGTTATTGGAAGTGCTATTGCTATTAGGATTTTGAGTAATGGCTTTGTTCCTCTTTGGGCTGGTGTTGTTATTACTGCTTTTGATTGTTTTATTTTCCTCTTTCTTGAGAACTATGGTGTGAGGAAATTGGAGGCATTTTTTGCGGTTCTGATTGCTGTAATGGCTCTTTCTTTTGCATGGATGTTTGGTAAAGCAAAGCCAGATGGTGTCGATGTTCTTGTTGGTATTTTGGTTCCTAAACTTAGCTCCAGAACTATACAACAAGCTGTCGGAGTTGTTGGTTGCATTATTATGCCTCACAATGTATTTTTACATTCGGCTCTTGTTCAATCAAGACGGGTTGACCCGAAAAAGAAAGGCCGTGTTCAAGAAGCTCTTAAATACTACTCGATAGAGTCCACCATTGCGCTCGTTGTCTCCTTTGTCATTAACATATTTGTCACAACTGTGTTTGCTAAGGGCTTTTACGGTACCGAAATAGCCAATAGGATCGGTCTCGTAAACGCAGGGCAGTATCTTCAGGAGAAGTATGGAGGTGGAGTATTCCCAATCCTTTATATATGGGCTATTGGGTTATTAGCAGCTGGTCAAAGCAGTACTATTACCGGTACATATGCTGGACAGTTCATCATGGGTGGCTTTCTGAATTTGAAGTTGAAAAAATGGATGAGGGCGTTGATTACGCGGAGTTTCGCAATCATTCCAACCATGATTGTTGCTCTTATATTTGACACCTCAGAGGAATCATTAGATGTTCTAAATGAATGGCTTAATGTTCTTCAGTCAGTACAAATCCCGTTCGCATTGATTCCTTTGCTTTGTTTGGTGTCGAAGGAACAGATAATGGGCACTTTCAAGATCGGCTCTGTCCTCAAGACTATTTCATGGCTGGTGGCTGCTCTGGTGATAGTGATAAATGGCTATCTTTTGCTGGAATTCTTTTCCTCTGAAGTGAATGGAGCAGCGATCACTGCTGTTGTGAGCGTAATAACAGCTGCATATGTTGCATTCATAATTTACCTTATTTCGAACTCCGTTACTATTTCATCATGGCAAAGATTAATTGGATCAAAGACAGTTACCACCACCACGGAGAGTTGA 1554 0.4299 MSHRQNQNQQQPLLEDQEDETAYDSSDKIVIIGEDESEYETDIDNGVRTPSFSWKKLWLFSGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCREEYPSWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGFVPLWAGVVITAFDCFIFLFLENYGVRKLEAFFAVLIAVMALSFAWMFGKAKPDGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRRVDPKKKGRVQEALKYYSIESTIALVVSFVINIFVTTVFAKGFYGTEIANRIGLVNAGQYLQEKYGGGVFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWMRALITRSFAIIPTMIVALIFDTSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGSVLKTISWLVAALVIVINGYLLLEFFSSEVNGAAITAVVSVITAAYVAFIIYLISNSVTISSWQRLIGSKTVTTTTES 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03405 517 PRINTS Natural resistance-associated macrophage protein signature 375 392 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi2g03405 517 PRINTS Natural resistance-associated macrophage protein signature 166 185 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi2g03405 517 PRINTS Natural resistance-associated macrophage protein signature 136 162 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi2g03405 517 PRINTS Natural resistance-associated macrophage protein signature 347 366 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi2g03405 517 PRINTS Natural resistance-associated macrophage protein signature 240 263 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi2g03405 517 PRINTS Natural resistance-associated macrophage protein signature 409 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi2g03405 517 PRINTS Natural resistance-associated macrophage protein signature 191 212 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi2g03405 517 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 55 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi2g03405 517 MobiDBLite consensus disorder prediction 1 16 - -
Vivi2g03405 517 Hamap Divalent metal cation transporter MntH [mntH]. 43 465 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi2g03405 517 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 22 496 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi2g03405 517 MobiDBLite consensus disorder prediction 1 25 - -
Vivi2g03405 517 Pfam Natural resistance-associated macrophage protein 78 439 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vivi2g03405 517 NCBIfam Nramp family divalent metal transporter 62 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03405 Vivi-Chr2 139645353 139648614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03405 36 502 Inorganic Solute Cotransporters AT2G23150 80.638 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03405 K21398 - gmx:100807811 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03405 2 139645353 139648614 Vivi2g03405 2 139645353 139648614 ECH
Vivi2g03405 2 139645353 139648614 Vivi1g02773 1 59786742 59789378 PCT