Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03390 ATGAACACAGCAATAACCAGAAAAGAAATGGATCGGATCAAAGGTCCATGGAGTCCTGAAGAAGACGAAGCTCTCCAAAAGCTCGTTGAGAAGCACGGGCCAAGAAACTGGTCGATAATCAGCAAATCGATTCCGGGACGATCCGGGAAATCATGTCGTCTGCGTTGGTGTAATCAGCTTTCTCCTCAGGTGGAGCATCGGGCTTTCACGGCGGAAGAGGATGATACTATAATCAGAGCCCATGCCCGATTCGGAAACAAATGGGCTACCATAGCCAGGCTTCTGTCGGGTCGAACCGACAACGCGATTAAAAACCACTGGAACTCTACTTTGAAACGTAAGTGTTCTTCTATTATGATCGATGAATCTCCACCGTTGAAAAGATCGGTTAGTGCTGGTGCTGCTATACCTGTTGGTAATGGGATTTACAAGAACCCTCCCACTCCGGGGAGTCCTTCTGGATCCGATGTGAGCGAGTCCAGTGTACCTATCATGAACTCTTCTCATATTTATCGTCCTGTGCCTACAAGAACCGTCGCGGCTCTACCTCTCGTAGAATCGAAAACGACGTCGTCTTCCAAATCCAATGATCCTGCAACTTCACTATCGTTATCACTACCTGGTATCGATTCTTCATCTGAAGATTCAAATCGTGTAACTGAGCCTGAGCCTGTTACCACCGCTCCTCCACCACCAACTGCGATCCCGTTGGTTCCGATAATGACTGCACCGATTCCGATGGCGGTTCCGATGCAGACACAGAGAGGATTCAATTTTAGTGCGGAGTTATTGACAGTGATGCAGGAAATGATAAGGACGGAGGTGAGAAGCTACATGGCAGGTTTGGAGCAGCAGAATGGGATGTGTATTTCCGATGATGGATACAGGAATGCTTCGGTGAAGCGAATGGGAATTAGCAGGATCGATTCGTAA 933 0.4802 MNTAITRKEMDRIKGPWSPEEDEALQKLVEKHGPRNWSIISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTAEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIMIDESPPLKRSVSAGAAIPVGNGIYKNPPTPGSPSGSDVSESSVPIMNSSHIYRPVPTRTVAALPLVESKTTSSSKSNDPATSLSLSLPGIDSSSEDSNRVTEPEPVTTAPPPPTAIPLVPIMTAPIPMAVPMQTQRGFNFSAELLTVMQEMIRTEVRSYMAGLEQQNGMCISDDGYRNASVKRMGISRIDS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03390 310 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Vivi2g03390 310 Pfam Myb-like DNA-binding domain 14 60 IPR001005 -
Vivi2g03390 310 Gene3D - 13 65 - -
Vivi2g03390 310 FunFam Transcription factor MYB44 68 114 - -
Vivi2g03390 310 FunFam MYB transcription factor 14 65 - -
Vivi2g03390 310 CDD SANT 68 111 IPR001005 -
Vivi2g03390 310 Gene3D - 67 129 - -
Vivi2g03390 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Vivi2g03390 310 SMART sant 65 113 IPR001005 -
Vivi2g03390 310 SMART sant 13 62 IPR001005 -
Vivi2g03390 310 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vivi2g03390 310 PANTHER MYB PROTEIN-RELATED 14 197 - -
Vivi2g03390 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 115 IPR017930 -
Vivi2g03390 310 MobiDBLite consensus disorder prediction 146 161 - -
Vivi2g03390 310 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Vivi2g03390 310 MobiDBLite consensus disorder prediction 187 223 - -
Vivi2g03390 310 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Vivi2g03390 310 MobiDBLite consensus disorder prediction 187 233 - -
Vivi2g03390 310 MobiDBLite consensus disorder prediction 141 161 - -
Vivi2g03390 310 CDD SANT 16 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03390 Vivi-Chr2 138958091 138959661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03390 6 286 MYB Transcription Factor Family AT4G37260 54.515 4.60e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi2g03390 Myb_DNA-binding 4.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03390 K09422 - gmx:780556 417.157