Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03385 ATGGAACCGACATCTGTTGGAACTCCTCCATCTTCTAACACTGAGAATAACTTGACCAAAGTAACAGCTGAAAATGGCAATGCACATGATTCACCATCCTCGTCACCAGCTTCTGGTATATCTTCCTGGGCAAGAAATCTGAGGATAGGGGCAGCAGATCAGAACTCACAGACTGAGAACAATGGCATGTCGGTATTTGCTCGCTGGACTAGTGGGATTGGACGACGAGGTCCTTCGAAAGAGACTGCTACGGACAATTCAGGACCCGATCAAAGTAATTTAATTGAATCATTCACCAAAGGGTTGATGGACTCTTCGAAGAATGCAGTAAAAGCGGTGCAGACCAAAGCACGCCATATTGTTTCTCAAAATAAACGCAGATACCAGGAAGGTGAGTTTGATTTGGATATGACGTACATCACTGACAACATAATAGCTATGGGATTTCCTGGTGGTGATTTTAGCTCGGGAATTTTTGGATACATTGAGGGGTTCTATCGAAATCACATGGAAGAAGTAATCAAGTTTTTTGAAACTCATCATAAGGGAAAATACAAAGTATACAATCTTTGTTCAGAGAGGTTGTACGATGGATCGCTTTTCCAAGGGAAGGTTGCAAGCTTCCCTTTTAGTGATCATAATTGCCCTCCTATTCAACTTATAGCATCATTTTGTCAAAGTGCATATTCATGGTTGAAGGAGGATATCCAGAATGTAGTAGTTGTTCATTGTAAAGCTGGTATGGGAAGAACAGGATTGATGGTTTGCAGTCTTCTTTTGTTTCTTAAGTTCTTCCCCACTGCTGAGGAAGCCATTGATTGCTTTAACCAGAAAAGATGTATAGATGGAAAGGCCCTAACTCTCCCAAGTCAGATTAGATATGTCAAATACTTTGAACGGACTTTAACACACTTCAATGGAGAAGTCCAGCCTGGACGAAGGTGTATGCTAAGAGGGTTTCGGCTTCACAAATGCCCTTATTGGGTTAGACCATCCATTACGATTTCTGATCATAATGGAATTCTTTTCACAACGAAAAAGCATCCCAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATCAATGCACCAAAGAAAGGATTTGTGGTCTTTGCTTTACCCGGGGAGCCTGGTCTGACCGAATTAGTTGGGGACTTCAAAATTCATTTTCATGATCGACAGGGAGATTTCTTCTGTTGGATGAATACAACAATGATAGAGAACAGAAAAATTTTAGATGGCTCAGATCTTGATGATTTTGACAAGAGAAAGATCCCTGCTCCAGGATTCCAGGTCGAAATTGTGATGGTAGACTATAATGGCACTCTACCTGGAAAAGTCAAATCTGCGAGCAAAGGATCTGATGGCAAACCAAGCAATGTCTTATCTGGTGCAAAGCCTACATCTAATACAAGTGAGAGTAAAGGACCTTCTAACGGAGATGATGATGTATTCTCAGATAGCGACGAAGAGGAGACCAAGGGAAAACAAAAGAGAGAAACTGCAACTGATTACAAATATATGGAACCTCATCAAGCATCTGAAGCCACCACTGGGCATGTAGAGATGTTGGCACACTCAACGAATCAGTTGTCACTTCAGCATGCGGAACGTACAGAAAACAATGCTTCTAAGGAATCAACCACAGATAAACTTCATAAAATTCACGCAGGCCCTAACACCTCCAACACGGAATTTGTAGGGGCAAGTGAAATCAAGGCAATTGCAGCAGATGCTTCAGTTTTTTCTTTTGGAGATGAAGATTTTGAGAGTGATTCAGAGGAGGCAGTTTGA 1794 0.4153 MEPTSVGTPPSSNTENNLTKVTAENGNAHDSPSSSPASGISSWARNLRIGAADQNSQTENNGMSVFARWTSGIGRRGPSKETATDNSGPDQSNLIESFTKGLMDSSKNAVKAVQTKARHIVSQNKRRYQEGEFDLDMTYITDNIIAMGFPGGDFSSGIFGYIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVASFPFSDHNCPPIQLIASFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMVCSLLLFLKFFPTAEEAIDCFNQKRCIDGKALTLPSQIRYVKYFERTLTHFNGEVQPGRRCMLRGFRLHKCPYWVRPSITISDHNGILFTTKKHPKTKDLMPEDFWINAPKKGFVVFALPGEPGLTELVGDFKIHFHDRQGDFFCWMNTTMIENRKILDGSDLDDFDKRKIPAPGFQVEIVMVDYNGTLPGKVKSASKGSDGKPSNVLSGAKPTSNTSESKGPSNGDDDVFSDSDEEETKGKQKRETATDYKYMEPHQASEATTGHVEMLAHSTNQLSLQHAERTENNASKESTTDKLHKIHAGPNTSNTEFVGASEIKAIAADASVFSFGDEDFESDSEEAV 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03385 597 MobiDBLite consensus disorder prediction 537 564 - -
Vivi2g03385 597 MobiDBLite consensus disorder prediction 489 506 - -
Vivi2g03385 597 ProSiteProfiles C2 tensin-type domain profile. 312 439 IPR014020 -
Vivi2g03385 597 MobiDBLite consensus disorder prediction 539 553 - -
Vivi2g03385 597 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 382 436 IPR035892 -
Vivi2g03385 597 SMART PTEN_C2_2 310 438 IPR014020 -
Vivi2g03385 597 CDD PTP_PTEN 136 300 IPR045101 GO:0016791
Vivi2g03385 597 ProSitePatterns Tyrosine specific protein phosphatases active site. 242 252 IPR016130 GO:0016311|GO:0016791
Vivi2g03385 597 MobiDBLite consensus disorder prediction 71 92 - -
Vivi2g03385 597 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 104 548 - -
Vivi2g03385 597 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 111 308 - -
Vivi2g03385 597 MobiDBLite consensus disorder prediction 448 508 - -
Vivi2g03385 597 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 139 305 IPR029021 -
Vivi2g03385 597 ProSiteProfiles Phosphatase tensin-type domain profile. 126 305 IPR029023 -
Vivi2g03385 597 Gene3D Protein tyrosine phosphatase superfamily 111 308 IPR029021 -
Vivi2g03385 597 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 240 279 IPR000387 GO:0016311|GO:0016791
Vivi2g03385 597 MobiDBLite consensus disorder prediction 453 481 - -
Vivi2g03385 597 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03385 Vivi-Chr2 138869125 138875976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03385 3 592 Protein tyrosine phosphatase (PTP) family AT3G19420 60.848 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03385 K01110 - gmx:100801622 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03385 2 138869125 138875976 Vivi2g03385 2 138869125 138875976 ECH
Vivi2g03385 2 138869125 138875976 Vivi1g03784 1 80519594 80526182 PCT