Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03359 ATGGAAGGAGGTGAAGGTGTGAAAGTAGAGAGAGAAACCATGGGAACAAGGAAGCGAAACGGCGTCGTTGTGGAAGGTGAGAGAAGATACAAAGGAATTCGTATGAGAAAGTGGGGGAAATGGGTTGCTGAAATTCGAGAACCAAATAAACGTTCCAGAATTTGGTTAGGTTCCTATTCTACCCCTGTCGCCGCCGCTCGAGCTTACGACACCGCCGTTTTCTATCTACGGGGACCGTCCGCGCGTCTCAATTTCCCGGAGTTGCTCGCTGGTGAAAACGCCGCCGTTGTTTCCGGTGGTGATATGTCGGCTGCTTCGATCAGGAAGAAAGCTACTGAAGTTGGTGCTAGGGTTGATGCTCTTCAAGCTACGCTTCATCAACATCATCACCATAATCATAATCATAATCATCACAACCATAACCATAACCACCGTGTGATGCCGATGCCGTTGCCGGTGGTGGTTGGTGGTGGTGGCGGTGGTGATTTAGTGGAGCGGGTTGATTTGAATAAGATTCCTGAACCGGAGAATTCGGATTGTGAGTGGGAAGTTAGTTAG 558 0.4928 MEGGEGVKVERETMGTRKRNGVVVEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLAGENAAVVSGGDMSAASIRKKATEVGARVDALQATLHQHHHHNHNHNHHNHNHNHRVMPMPLPVVVGGGGGGDLVERVDLNKIPEPENSDCEWEVS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03359 185 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Vivi2g03359 185 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Vivi2g03359 185 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Vivi2g03359 185 PRINTS Ethylene responsive element binding protein signature 68 88 IPR001471 GO:0003700|GO:0006355
Vivi2g03359 185 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Vivi2g03359 185 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Vivi2g03359 185 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Vivi2g03359 185 CDD AP2 29 88 IPR001471 GO:0003700|GO:0006355
Vivi2g03359 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 16 143 - -
Vivi2g03359 185 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03359 Vivi-Chr2 138533448 138534528 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03359 1 183 AP2-EREBP Transcription Factor Family AT5G67190 58.031 1.49e-64 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi2g03359 AP2 1.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03359 K09286 - qsa:O6P43_034519 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03359 2 138533448 138534528 Vivi2g03359 2 138533448 138534528 ECH