Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03356 ATGTGGAATCTGAATGACTCACCCGATCAGAGAAAAAACTACGAATCAGAAGGATGTTCAATCGAGGGTGAAGAAGTTGATGAAAAAGGAAAGAGAGTTGGATCTGTTTCGAATTCAAGTTCATCTGTAGTTGTTATAGAAGATGGATCGGAAGAAGAAGGTAACGATAACAGCAATAACAGTAACGGTAACGGAAACGGTAACGGAGTGTTGAGGAAACGAACTAGTAAGATTTTCGGATTCTCAATGGATGACAGTGACGACAGTCCGCCGGTGACTAGACAGTTTTTTCCGGTGGAGGATTCTGAGGTGACAGCGGTGGTTGATTCTCCTTCCGGTGGCGGCGGTGTGGTTGGTTCTTCTTTTCCACGTGCTCACTGGGTTGGTGTGAAGTTTTGTCAATCGGAGACAGTTAACGGTGGGAAATCGGTTGAAGCGTCGTCGCAACCGATTAAGAAGAGTCGTCGGGGACCGAGGTCAAGAAGTTCGCAGTATAGAGGTGTTACTTTTTACCGACGAACAGGTCGATGGGAATCTCATATATGGGATTGTGGAAAACAAGTGTATTTGGGTGGATTTGACACGGCACATGCAGCTGCTCGTGCATATGATAGAGCTGCAATTAAGTTTAGAGGAGTGGAAGCGGATATAAATTTCAATATAGAAGATTATGAAGAGGATTTGAAGCAGATGAGCAATTTAACAAAGGAAGAGTTTGTGCATGTGCTTCGGCGACAAAGCACTGGATTTCCGAGAGGGAGTTCGAAATATAGAGGTGTAACTTTGCATAAATGTGGAAGATGGGAGGCTCGAATGGGTCAATTCTTAGGCAAAAATTTGATTCGATTTACTAGGTATGTTTATTTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAGGGCATATGATAAAGCAGCAATAAAATGCAATGGTAAAGAGGCTGTTACCAATTTTGATCCCAGCATCTATGATAATGAGCTTAATACTACTACTGAATCCTCGGGTAATGCCGCGGAGCATAATCTGGATTTAAGTTTGGGTAATTCAAGTTCTAAAGGTAATAATAGTCAAGCATTTGTTACTGATCAGCATATGGCACCTGAATCAAATTGGCGGAATGGTGGAATCAGGCCTAAACCGGTAAATATACTTCCAAGACCATGTGGTGTAAGTAACATGGAAGGCTATGCAAGGGATGTGTATGGAGAGAGCGAAGCCTTGCGGATGTTAAGCCAAACTCATCTTCAATCTCCCGTCACTAATGAAATGCATAGATATGGTCCCTACCGGTCACCTGTTGAACAACACTACCCTCAAATGCTTCACAGTTTTCCACATCTTCACCCCTCAAATTTTCATGTATCGATCAGCAGCAGCAGCAACGGAGGCCGAATTGGAAGCGACTTATCATTATCAATGTCGGAACAACAAAAATGGCAAACTGGGCCGCCACATTTGTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCACCTCAGATAACAAGACCCTCTTCTTCTTCTTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACACTCATGAGACCCTCTTGA 1581 0.4358 MWNLNDSPDQRKNYESEGCSIEGEEVDEKGKRVGSVSNSSSSVVVIEDGSEEEGNDNSNNSNGNGNGNGVLRKRTSKIFGFSMDDSDDSPPVTRQFFPVEDSEVTAVVDSPSGGGGVVGSSFPRAHWVGVKFCQSETVNGGKSVEASSQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKNLIRFTRYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNTTTESSGNAAEHNLDLSLGNSSSKGNNSQAFVTDQHMAPESNWRNGGIRPKPVNILPRPCGVSNMEGYARDVYGESEALRMLSQTHLQSPVTNEMHRYGPYRSPVEQHYPQMLHSFPHLHPSNFHVSISSSSNGGRIGSDLSLSMSEQQKWQTGPPHLLATAAAASSGFPPQITRPSSSSSSQGWLQKNGFHTLMRPS 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03356 526 MobiDBLite consensus disorder prediction 10 32 - -
Vivi2g03356 526 Pfam AP2 domain 164 212 IPR001471 GO:0003700|GO:0006355
Vivi2g03356 526 Pfam AP2 domain 255 310 IPR001471 GO:0003700|GO:0006355
Vivi2g03356 526 PRINTS Ethylene responsive element binding protein signature 301 321 IPR001471 GO:0003700|GO:0006355
Vivi2g03356 526 PRINTS Ethylene responsive element binding protein signature 257 268 IPR001471 GO:0003700|GO:0006355
Vivi2g03356 526 MobiDBLite consensus disorder prediction 494 526 - -
Vivi2g03356 526 MobiDBLite consensus disorder prediction 139 164 - -
Vivi2g03356 526 MobiDBLite consensus disorder prediction 495 517 - -
Vivi2g03356 526 MobiDBLite consensus disorder prediction 55 71 - -
Vivi2g03356 526 FunFam AP2-like ethylene-responsive transcription factor 163 222 - -
Vivi2g03356 526 SUPERFAMILY DNA-binding domain 163 221 IPR016177 GO:0003677
Vivi2g03356 526 ProSiteProfiles AP2/ERF domain profile. 256 319 IPR001471 GO:0003700|GO:0006355
Vivi2g03356 526 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 88 411 - -
Vivi2g03356 526 CDD AP2 164 221 IPR001471 GO:0003700|GO:0006355
Vivi2g03356 526 MobiDBLite consensus disorder prediction 326 355 - -
Vivi2g03356 526 SMART rav1_2 256 325 IPR001471 GO:0003700|GO:0006355
Vivi2g03356 526 SMART rav1_2 164 226 IPR001471 GO:0003700|GO:0006355
Vivi2g03356 526 Gene3D AP2/ERF domain 163 222 IPR036955 GO:0003700|GO:0006355
Vivi2g03356 526 Gene3D AP2/ERF domain 255 320 IPR036955 GO:0003700|GO:0006355
Vivi2g03356 526 ProSiteProfiles AP2/ERF domain profile. 164 220 IPR001471 GO:0003700|GO:0006355
Vivi2g03356 526 SUPERFAMILY DNA-binding domain 255 321 IPR016177 GO:0003677
Vivi2g03356 526 CDD AP2 255 321 IPR001471 GO:0003700|GO:0006355
Vivi2g03356 526 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03356 Vivi-Chr2 138385164 138389267 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03356 1 357 AP2-EREBP Transcription Factor Family AT4G36920 65.229 4.12e-131 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi2g03356 AP2 3.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03356 K09284 - gmx:100786333 692.96