Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03355 ATGTGGAATCTGAATGACTCACCCGATCAGAGAAAAAACTACGAATCAGAAGGATGTTCAATCGAGGGTGAAGAAGTTGATGAAAAAGGAAAGAGAGTTGGATCTGTTTCGAATTCAAGTTCATCTGTAGTTGTTATAGAAGATGGATCGGAAGAAGAAGGTAACGATAACAGCAATAACAGTAACGGTAACGGAAACGGTAACGGAGTGTTGAGGAAACGAACTAGTAAGATTTTCGGATTCTCAATGGATGACAGTGACGACAGTCCGCCGGTGACTAGACAGTTTTTTCCGGTGGAGGATTCTGAGGTGACAGCGGTGGTTGATTCTCCTTCCGGTGGCGGCGGTGTGGTTGGTTCTTCTTTTCCACGTGCTCACTGGGTTGGTGTGAAGTTTTGTCAATCGGAGACAGTTAACGGTGGGAAATCGGTTGAAGCGTCGTCGCAACCGATTAAGAAGAGTCGTCGGGGACCGAGGTCAAGAAGTTCGCAGTATAGAGGTGTTACTTTTTACCGACGAACAGGTCGATGGGAATCTCATATATGGGATTGTGGAAAACAAGTGTATTTGGGTGGATTTGACACGGCACATGCAGCTGCTCGTGCATATGATAGAGCTGCAATTAAGTTTAGAGGAGTGGAAGCGGATATAAATTTCAATATAGAAGATTATGAAGAGGATTTGAAGCAGATGAGCAATTTAACAAAGGAAGAGTTTGTGCATGTGCTTCGGCGACAAAGCACTGGATTTCCGAGAGGGAGTTCGAAATATAGAGGTGTAACTTTGCATAAATGTGGAAGATGGGAGGCTCGAATGGGTCAATTCTTAGGCAAAAAGTATGTTTATTTGGGTTTGTTTGACACCGAGATTGAAGCTGCAAGGGCATATGATAAAGCAGCAATAAAATGCAATGGTAAAGAGGCTGTTACCAATTTTGATCCCAGCATCTATGATAATGAGCTTAATACTACTACTGAATCCTCGGGTAATGCCGCGGAGCATAATCTGGATTTAAGTTTGGGTAATTCAAGTTCTAAAGGTAATAATAGTCAAGCATTTGTTACTGATCAGCATATGGCACCTGAATCAAATTGGCGGAATGGTGGAATCAGGCCTAAACCGGTAAATATACTTCCAAGACCATGTGGTGTAAGTAACATGGAAGGCTATGCAAGGGATGTGTATGGAGAGAGCGAAGCCTTGCGGATGTTAAGCCAAACTCATCTTCAATCTCCCGTCACTAATGAAATGCATAGATATGGTCCCTACCGGTCACCTGTTGAACAACACTACCCTCAAATGCTTCACAGTTTTCCACATCTTCACCCCTCAAATTTTCATGTAGGTATCGATCAGCAGCAGCAGCAACGGAGGCCGAATTGGAAGCGACTTATCATTATCAATGTCGGAACAACAAAAATGGCAAACTGGGCCGCCACATTTGTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCACCTCAGATAACAAGACCCTCTTCTTCTTCTTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACACTCATGAGACCCTCTTGAACCTTCAAAACTATTTCAACCTTGCCATTTTTAATTCACATTTAAATAATCTTCTCTTATTGCTATTATTTTTTTCTTTCTCTTGA 1653 0.4277 MWNLNDSPDQRKNYESEGCSIEGEEVDEKGKRVGSVSNSSSSVVVIEDGSEEEGNDNSNNSNGNGNGNGVLRKRTSKIFGFSMDDSDDSPPVTRQFFPVEDSEVTAVVDSPSGGGGVVGSSFPRAHWVGVKFCQSETVNGGKSVEASSQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNTTTESSGNAAEHNLDLSLGNSSSKGNNSQAFVTDQHMAPESNWRNGGIRPKPVNILPRPCGVSNMEGYARDVYGESEALRMLSQTHLQSPVTNEMHRYGPYRSPVEQHYPQMLHSFPHLHPSNFHVGIDQQQQQRRPNWKRLIIINVGTTKMANWAATFVSNCCCSIIRIPTSDNKTLFFFFFSRLAAEKWVPHTHETLLNLQNYFNLAIFNSHLNNLLLLLLFFSFS 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03355 550 MobiDBLite consensus disorder prediction 10 32 - -
Vivi2g03355 550 SMART rav1_2 256 319 IPR001471 GO:0003700|GO:0006355
Vivi2g03355 550 SMART rav1_2 164 226 IPR001471 GO:0003700|GO:0006355
Vivi2g03355 550 PRINTS Ethylene responsive element binding protein signature 257 268 IPR001471 GO:0003700|GO:0006355
Vivi2g03355 550 PRINTS Ethylene responsive element binding protein signature 295 315 IPR001471 GO:0003700|GO:0006355
Vivi2g03355 550 FunFam AP2-like ethylene-responsive transcription factor 163 222 - -
Vivi2g03355 550 SUPERFAMILY DNA-binding domain 255 315 IPR016177 GO:0003677
Vivi2g03355 550 Gene3D AP2/ERF domain 255 314 IPR036955 GO:0003700|GO:0006355
Vivi2g03355 550 Gene3D AP2/ERF domain 163 222 IPR036955 GO:0003700|GO:0006355
Vivi2g03355 550 MobiDBLite consensus disorder prediction 139 164 - -
Vivi2g03355 550 CDD AP2 255 315 IPR001471 GO:0003700|GO:0006355
Vivi2g03355 550 SUPERFAMILY DNA-binding domain 163 221 IPR016177 GO:0003677
Vivi2g03355 550 ProSiteProfiles AP2/ERF domain profile. 256 313 IPR001471 GO:0003700|GO:0006355
Vivi2g03355 550 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 88 393 - -
Vivi2g03355 550 MobiDBLite consensus disorder prediction 55 71 - -
Vivi2g03355 550 Pfam AP2 domain 164 212 IPR001471 GO:0003700|GO:0006355
Vivi2g03355 550 Pfam AP2 domain 255 304 IPR001471 GO:0003700|GO:0006355
Vivi2g03355 550 CDD AP2 164 221 IPR001471 GO:0003700|GO:0006355
Vivi2g03355 550 FunFam AP2-like ethylene-responsive transcription factor 255 315 - -
Vivi2g03355 550 MobiDBLite consensus disorder prediction 324 349 - -
Vivi2g03355 550 ProSiteProfiles AP2/ERF domain profile. 164 220 IPR001471 GO:0003700|GO:0006355
Vivi2g03355 550 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03355 Vivi-Chr2 138385163 138389270 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03355 1 351 AP2-EREBP Transcription Factor Family AT4G36920 66.575 1.07e-132 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi2g03355 AP2 3.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03355 K09284 - gmx:100786333 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03355 2 138385163 138389270 Vivi2g03355 2 138385163 138389270 ECH
Vivi2g03355 2 138385163 138389270 Vivi1g02836 1 61483656 61486934 PCT