Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03345 ATGAAAATACGCTACATATTTAAGAAGTTATCAAGAATATCTCATCAATTCCGTTTAGTTAACTGGAATGAAGACAACAGCCCAACTCGTGATGCTAGAACTCTAAGATATTTGATGGATTCTAATTCTCCTTCGTCGTTTGCTTTCAACAATCGCATAGGATTGATTGGGACTAGAGATCAAACTATACCTCTTCACACAAATCCAACAAACAATACTACTAGCCATACTATAAATGGGAATTATCATCCAACAATCACCAACATTAGTAACTATAATGATAATCAAACTTCTCCTTCTCCTCACTCGTCTCCGCCGAAACTCTTTGGTTCATCTCTCATTTTAGCTCCTACTATCAGAAGAAGTACTGTTCAGTATATAAATACAACACAACCATCATCTATGAATTCAAATATGACCCAACTTGGGACAGCTGGATCAAATTTTCATCAAGTTCAAAGTAGAACAACAAATAATAATAATGGTATTTCTACTTCATTTAATAATGGTATAAATAACGACGTTGTTGCATCTGCTACTATTACTTCTACTAGTACTAGTAATGGCTTTCTCAAAAGAAGTAGATCATCAGAGTTTGTGAGAGGAGAGAGTTCGAATCAAGGTTCACAAGTTGGTGCCTTAAGAAGACGCACAAATCCTCCTCCTCATAGTTTCCAACATGAAACTATGAACAATAATATCATGTCTTCGACTCAATTATCAATGCATTACAACTACAATGGTAATAGTGGGTTTTCAAGTATGGTGCCGCAACAAGTGAACCATCATGGTGTAAGTGCAACACAAAATTCTATTATAGATGATTCTCACATAAATAATCGACGTCATGCACATGCTAGTCCGATAAGTTTTTTTGATGATACACCGTCATATAATAGCCCATATGAATATATCATTGATGATAATGTTGCTTGCTTAATATTTCCTTCTCAACAAGAGATTGCTCGAGAAAACTTCACCATGACCCGAAGAACTGAACCTACATCTACTTCTACCTCTACAACATCTTTATATCCTTCCGCAATGACAGGAGGATCAACTCAGGTTACAGTGAGTACATCACCATTTCAAAGAAATAATAATTTCTTGTCTTTTGGAGCCGATTCATCTTTATCCTCCCATAATCCAAGGGATATATTTGATTCTATTGAACAAAGATCTGATGATACATTCATTCAAAGCACCATAAATGTTCAACAATATGTAAGGTTTTTACCAGAAGGCCAGGGGAATAGATTTCTGGCTCCATCTACTGTTCACGTGTGGTCTAATAATTTTGTACCACGATGGCCACAACGACATTCTAATCCTTCAACAAGTGGTTATAACCTAAACCCTCCCCCATCCCATAATGGACCAAGGTTTAGTACTGCTGTTGAATATGATCAATACATGCAGTCTGATATAATACCGACTAGATCGAGGAATCGTCGTCGCAGTAATAACCGCATTTTCACCTCAACTTCACGTGAACATAGGGCTCAGAGGAACAGGCACAGGGATGAGGTGTTTTTGGCACTCGAGGAACGCATGAGGGCTGAGGCCAGACTCACTGAAGAGCAGATCCACAAATATATTGAAACAGAAACATATGTGTCAAATCCAATTGAAACCAGTACACAAAACGAAACATGCACAATCTGTCAGGAAGACTATGTGGAAGGCGAAATTATTGGAAGACTGGATTGCAAGCACCTATATCATCTTGAATGCATCAAACAATGGTTGTTGAAAAAGAATACTTGTCCAATTTGTAAGAAAATAGCTTTAGATGTTCACGAAGATGAGGATGATAATGTCATATAA 1827 0.3711 MKIRYIFKKLSRISHQFRLVNWNEDNSPTRDARTLRYLMDSNSPSSFAFNNRIGLIGTRDQTIPLHTNPTNNTTSHTINGNYHPTITNISNYNDNQTSPSPHSSPPKLFGSSLILAPTIRRSTVQYINTTQPSSMNSNMTQLGTAGSNFHQVQSRTTNNNNGISTSFNNGINNDVVASATITSTSTSNGFLKRSRSSEFVRGESSNQGSQVGALRRRTNPPPHSFQHETMNNNIMSSTQLSMHYNYNGNSGFSSMVPQQVNHHGVSATQNSIIDDSHINNRRHAHASPISFFDDTPSYNSPYEYIIDDNVACLIFPSQQEIARENFTMTRRTEPTSTSTSTTSLYPSAMTGGSTQVTVSTSPFQRNNNFLSFGADSSLSSHNPRDIFDSIEQRSDDTFIQSTINVQQYVRFLPEGQGNRFLAPSTVHVWSNNFVPRWPQRHSNPSTSGYNLNPPPSHNGPRFSTAVEYDQYMQSDIIPTRSRNRRRSNNRIFTSTSREHRAQRNRHRDEVFLALEERMRAEARLTEEQIHKYIETETYVSNPIETSTQNETCTICQEDYVEGEIIGRLDCKHLYHLECIKQWLLKKNTCPICKKIALDVHEDEDDNVI 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03345 608 MobiDBLite consensus disorder prediction 194 214 - -
Vivi2g03345 608 MobiDBLite consensus disorder prediction 480 505 - -
Vivi2g03345 608 MobiDBLite consensus disorder prediction 194 229 - -
Vivi2g03345 608 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 511 596 IPR013083 -
Vivi2g03345 608 MobiDBLite consensus disorder prediction 439 458 - -
Vivi2g03345 608 SMART ring_2 552 592 IPR001841 -
Vivi2g03345 608 MobiDBLite consensus disorder prediction 491 505 - -
Vivi2g03345 608 ProSiteProfiles Zinc finger RING-type profile. 552 593 IPR001841 -
Vivi2g03345 608 MobiDBLite consensus disorder prediction 330 355 - -
Vivi2g03345 608 Pfam Ring finger domain 551 593 IPR001841 -
Vivi2g03345 608 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 88 597 IPR045191 GO:0061630
Vivi2g03345 608 SUPERFAMILY RING/U-box 551 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03345 Vivi-Chr2 137819605 137822210 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03345 497 597 C3H Transcription Factor Family AT2G15530 42.857 1.33e-19 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03345 - - vvo:131650147 1161.36