Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03344 ATGTCTCATCAATTCCGTTTAGTTAACTGGAATGAAGACAACAGCCCAACTCGTGATGCTAGAACTCTAAGATATTTGATGGATTCTAATTCTCCTTCGTCGTTTGCTTTCAACAATCGCATAGGATTGATTGGGACTAGAGATCAAACTATACCTCTTCACACAAATCCAACAAACAATACTACTAGCCATACTATAAATGGGAATTATCATCCAACAATCACCAACATTAGTAACTATAATGATAATCAAACTTCTCCTTCTCCTCACTCGTCTCCGCCGAAACTCTTTGGTTCATCTCTCATTTTAGCTCCTACTATCAGAAGAAGTACTGTTCAGTATATAAATACAACACAACCATCATCTATGAATTCAAATATGACCCAACTTGGGACAGCTGGATCAAATTTTCATCAAGTTCAAAGTAGAACAACAAATAATAATAATGGTATTTCTACTTCATTTAATAATGGTATAAATAACGACGTTGTTGCATCTGCTACTATTACTTCTACTAGTACTAGTAATGGCTTTCTCAAAAGAAGTAGATCATCAGAGTTTGTGAGAGGAGAGAGTTCGAATCAAGGTTCACAAGTTGGTGCCTTAAGAAGACGCACAAATCCTCCTCCTCATAGTTTCCAACATGAAACTATGAACAATAATATCATGTCTTCGACTCAATTATCAATGCATTACAACTACAATGGTAATAGTGGGTTTTCAAGTATGGTGCCGCAACAAGTGAACCATCATGGTGTAAGTGCAACACAAAATTCTATTATAGATGATTCTCACATAAATAATCGACGTCATGCACATGCTAGTCCGATAAGTTTTTTTGATGATACACCGTCATATAATAGCCCATATGAATATATCATTGATGATAATGTTGCTTGCTTAATATTTCCTTCTCAACAAGAGATTGCTCGAGAAAACTTCACCATGACCCGAAGAACTGAACCTACATCTACTTCTACCTCTACAACATCTTTATATCCTTCCGCAATGACAGGAGGATCAACTCAGGTTACAGTGAGTACATCACCATTTCAAAGAAATAATAATTTCTTGTCTTTTGGAGCCGATTCATCTTTATCCTCCCATAATCCAAGGGATATATTTGATTCTATTGAACAAAGATCTGATGATACATTCATTCAAAGCACCATAAATGTTCAACAATATGTAAGGTTTTTACCAGAAGGCCAGGGGAATAGATTTCTGGCTCCATCTACTGTTCACGTGTGGTCTAATAATTTTGTACCACGATGGCCACAACGACATTCTAATCCTTCAACAAGTGGTTATAACCTAAACCCTCCCCCATCCCATAATGGACCAAGGTTTAGTACTGCTGTTGAATATGATCAATACATGCAGTCTGATATAATACCGACTAGATCGAGGAATCGTCGTCGCAGTAATAACCACATTTTCACCTCAACTTCACGTGAACATAGGGCTCAGAGGAACAGGCACAGGGATGAGGTGATTTTGGCACTCGAGGAACGCATGAGGGCTGAGGCCAGACTCACAGAAGAGCAGATCCACACATATATTGAAACAGAAACATATGTGTCAAATCCAAATGAAACCAGTACACAAAATGAAACATGCACAATCTGTCAGGAAGACTATGTGGAAGGCGAAATTATTGGAAGACTGGATTGCAAGCACCTATATCATCTTGAATGCATCAAACAATGGTTGATGAAAAAGAATACATGTCCAATTTGTAAGAAAATAGCTTTAGATGTTCACGAAGATGAGGATCATAGTGTCATATAA 1791 0.3741 MSHQFRLVNWNEDNSPTRDARTLRYLMDSNSPSSFAFNNRIGLIGTRDQTIPLHTNPTNNTTSHTINGNYHPTITNISNYNDNQTSPSPHSSPPKLFGSSLILAPTIRRSTVQYINTTQPSSMNSNMTQLGTAGSNFHQVQSRTTNNNNGISTSFNNGINNDVVASATITSTSTSNGFLKRSRSSEFVRGESSNQGSQVGALRRRTNPPPHSFQHETMNNNIMSSTQLSMHYNYNGNSGFSSMVPQQVNHHGVSATQNSIIDDSHINNRRHAHASPISFFDDTPSYNSPYEYIIDDNVACLIFPSQQEIARENFTMTRRTEPTSTSTSTTSLYPSAMTGGSTQVTVSTSPFQRNNNFLSFGADSSLSSHNPRDIFDSIEQRSDDTFIQSTINVQQYVRFLPEGQGNRFLAPSTVHVWSNNFVPRWPQRHSNPSTSGYNLNPPPSHNGPRFSTAVEYDQYMQSDIIPTRSRNRRRSNNHIFTSTSREHRAQRNRHRDEVILALEERMRAEARLTEEQIHTYIETETYVSNPNETSTQNETCTICQEDYVEGEIIGRLDCKHLYHLECIKQWLMKKNTCPICKKIALDVHEDEDHSVI 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03344 596 SMART ring_2 540 580 IPR001841 -
Vivi2g03344 596 MobiDBLite consensus disorder prediction 182 202 - -
Vivi2g03344 596 SUPERFAMILY RING/U-box 524 585 - -
Vivi2g03344 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 584 IPR013083 -
Vivi2g03344 596 MobiDBLite consensus disorder prediction 182 217 - -
Vivi2g03344 596 Pfam Ring finger domain 539 581 IPR001841 -
Vivi2g03344 596 ProSiteProfiles Zinc finger RING-type profile. 540 581 IPR001841 -
Vivi2g03344 596 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 76 585 IPR045191 GO:0061630
Vivi2g03344 596 MobiDBLite consensus disorder prediction 467 492 - -
Vivi2g03344 596 MobiDBLite consensus disorder prediction 427 446 - -
Vivi2g03344 596 MobiDBLite consensus disorder prediction 318 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03344 Vivi-Chr2 137777357 137779821 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03344 485 585 C3H Transcription Factor Family AT2G15530 42.857 6.61e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03344 - - vvo:131650147 1125.54