Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03343 ATGTCTCATCAATTCCGTTTAGTTAACTGGAATGAAGACAACAGCCCAACTCGTGATGCTAGAACTGTAAGATATTTGATGGATTCTAATTCTCCTTCGACGTTTGCTTTCAACAATCGCATAAGATTGACTGGGACCAGAGATCAAACTATACCTCTTCACACAAATCCAACAAACATTACTACTAGCCATACTACAAATGGGAATTATCATCCAACAATCACCAACATTAGTAACTATAATGATAATCAAACTTCTCCTTCTCCTCACTCGTCTCCGCCGAGACTCTTTGGTTCATCTCTCATTTTAGCTCCTACTATCAGAAGTACTGTTCAGTATATAAATACAACATTACCATCATCTATGAATTCAAGTATGACACAACTTGAGGCAGCTGGATCAAATTTTCATCAAGTTCAAAGTAGAACAGCAAATAATAATAATGGTATTTCTACTTCATTTAATAATGGTATAAATAACGACGTTGTTGCATCTGCTACTATTACTTCTACTAGTACTGGTAATGGCTTGCTCAAAAGAAGTAGATCATCAGAGTTTGTGAGAGGAGAGAGTTCGAATCAAGGTTCACAAGTTGGTGCCTTAAGAAGACGAACAAATCCTCCTCCTCATAGTGTCCAACATGAAACTATGAACAATAATAACATGTCTTCAACTCGATTATCAAGTATGGTGCCGCAACAAGTGAACCGTCATGGTGTAAGTGCAATACAAAATTTTATTATAGATGATTCTCACATAAATAATCAACATCATGTCCATGCTAGTCCATTAAATTTTTTAGATGATACACCGTCATATAATAGCCCATATGAATATATCATTGATGATAATGTTGCTTGCTTAATATTTCCTTCTCAACAAGAGATTGCCCGAGAAAACTTCACCATGACCCGAAGAACTGAACCTACATCTGCTTCTACCTCTACGACATCTCTATATCCTTCCGCAATGACAGGAGGAACAACTCAAGTCGCAGTGAGTACATCACCATTTCAAAGAAATAATAATTTCTTGTCTTTTGGAGCCGATTCATCTTTATCCTCCCATAATCCAAGGGATATATTTGAATCTATTGAACAAAGATTTGATGATACGTTCATTCAAAGCACCATAAATGTTCAACAATATGTAAGGCTTTTACCAGAAGGTCAGGGGAATAGATTTCTGGCTCCATCTACTGTTCACGTGTGGTCTAATAATTTTGTACCAGGATGGCCACAACGACATTCTAATCCTTCCACAAGTGGTTATAACCTAAACCCTCCCCCATCCCATAATGGACCAAGGTTTAATACTGCTGTTGAAAATGATCAATACATGCAGTCCCATATAATATCGGCTAGGTCGAGGAATCGTCGTCGCAGTAATAACCGCATGTTCACCTCAACTTCACGTGAACATAGGGCTCAGAGGAACAGGCACAGGGATGAGGTGTTTTTGGCACTCGAGGAACGTAGGAGGGCTGAGGCCAGACTCACTGAAGAGCAGATCCGCACATATATTAAAACAGAAACATATGTGTCAAATCCAAATGAAACTAGTACACAAAACGAAACATGCACAATCTGTCAGGAAGACTATGTGGAAGGCGAAATTATTGGAAGACTGGATTGCAAGCACCTATATCATCTTGAATGCATCAAACAATGGTTGTTGAAAAAGAATACTTGTCCAATTTGTAAGAAAATAGCTTTAGATGTTCACGAAGATGAGGATGATAGTGTCATATAA 1752 0.3801 MSHQFRLVNWNEDNSPTRDARTVRYLMDSNSPSTFAFNNRIRLTGTRDQTIPLHTNPTNITTSHTTNGNYHPTITNISNYNDNQTSPSPHSSPPRLFGSSLILAPTIRSTVQYINTTLPSSMNSSMTQLEAAGSNFHQVQSRTANNNNGISTSFNNGINNDVVASATITSTSTGNGLLKRSRSSEFVRGESSNQGSQVGALRRRTNPPPHSVQHETMNNNNMSSTRLSSMVPQQVNRHGVSAIQNFIIDDSHINNQHHVHASPLNFLDDTPSYNSPYEYIIDDNVACLIFPSQQEIARENFTMTRRTEPTSASTSTTSLYPSAMTGGTTQVAVSTSPFQRNNNFLSFGADSSLSSHNPRDIFESIEQRFDDTFIQSTINVQQYVRLLPEGQGNRFLAPSTVHVWSNNFVPGWPQRHSNPSTSGYNLNPPPSHNGPRFNTAVENDQYMQSHIISARSRNRRRSNNRMFTSTSREHRAQRNRHRDEVFLALEERRRAEARLTEEQIRTYIKTETYVSNPNETSTQNETCTICQEDYVEGEIIGRLDCKHLYHLECIKQWLLKKNTCPICKKIALDVHEDEDDSVI 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03343 583 MobiDBLite consensus disorder prediction 49 68 - -
Vivi2g03343 583 MobiDBLite consensus disorder prediction 172 220 - -
Vivi2g03343 583 ProSiteProfiles Zinc finger RING-type profile. 527 568 IPR001841 -
Vivi2g03343 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 486 571 IPR013083 -
Vivi2g03343 583 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 270 572 IPR045191 GO:0061630
Vivi2g03343 583 SMART ring_2 527 567 IPR001841 -
Vivi2g03343 583 MobiDBLite consensus disorder prediction 187 201 - -
Vivi2g03343 583 SUPERFAMILY RING/U-box 508 572 - -
Vivi2g03343 583 Pfam Ring finger domain 526 568 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03343 Vivi-Chr2 137742497 137744922 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03343 472 572 C3H Transcription Factor Family AT2G15530 42.857 1.25e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03343 - - vvo:131650147 1024.23