Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03337 ATGCATGCAGTTAAGAAGAAGTTATCAAGAATGGCTCATCAATTCTGTTTAGCTAATTGGAACGAAGACAACAGCCCAACTCGTGATGCTAGAGCTCTAAGTTATTTGATTGCTTCTAATTCTCCTTCGTCAGTTGCTTTCAACAATCCCACAGGATTGGCTGGTAATCAAACTATGCTTCTTAACACAAACCCAACAAATAATACTACTAGCCACACTACAAATGAGGATTATTATCATTTTCCTATGGTAAATCCAACAATCACCAATATTAGTAACTATAATGATAATCAAACTTCTCCTTCTCATGACTCGTCCCCGCCGAGACTCTTTGGTTCATCTCTCATTTTAGCTCCTACTACCAGAAGAAGTACTGCTCGGTATATAAATACAACACGACCATCATCTATGAATTCAAGTATGGCACAACTTGGAGCAGATGCATCAAATTATCATCAAGTTCAAAGTAGAAAAACAAATAATAATAATGGTATTTCTACTTCATTTGATAATAGTAGAAATAACGACGTTGTTGCATCTGCTACTATTACTTCTATTGGTACTGGTAATGCTTTCCTCAAAAGAAGTAGATCATCAGAGTTTGTGAGAGGAGAGAGTTCGAATCAAAGTTCACAAGTTGGTGGAGCCTTCAGAAGACGCACAAATCCTCCTCCTCCTAGTTTTCAACATGAAATTGTAAACAATAATAGCAATAATAGTGGGTTTTCAAGAGGAGAAACTCAGGTTGCAGTTACTACATCACCATTTCCAAGAAATAATAATTTCTTGTCTTCTGAAGTCGTTTCATCTTTATCCTCTCGAAGTCCAAGATGGGAGTTTAATAGTTTTAGTAATACCAATAACAACAACAACAACAACATCAACACCAATTTGAATATATTTGATCCTACTGAACAAAGATTTGATGATACATTCAATCATAGCACCATAAATGTTCAACAATATGTAAGGCTTTTACCCGGAGGTCACGTGGATCGATTTTTGGCTCCATCTATTGTTCATGTGCGGTCTAATAATTTTGTACCACGAGGATCACAGCCACCTTCTAATCCTTCAACAAGTAGTAACCGTCTAAACCCTCCTTCAGCCCCTACGGTTGTTGAATCTGATCAATACATGGAGCCGGGTACAATACTGGCTGGACAGGGGAACCGTCGTCGTGGTAATAACCACATTTTCACCTCAACTTCTCCTGAACTTAGGGCTCGGAGGAACAGGCTTAGGGATGAGCATCTACGCGCCGGTGGCTCTATGCGAAGACAGGACATGTTGACAATGGATTATTCAATTGTGTTAAATGTGTTTGATTCTTTTGAACGTATCAATATGCTACATAATATAGTTGATTGGCCATATGAGGCACTTTTAGCCCTCGAAGAACACATAAGGAGGGTCGAGACAGGGCTTACTGAAGAAGAGATCCACGCATATATTGAGACAGAAATATATGTGTCAAATCCAAATGAAACCAGTACACAAAATAAAACTTGCACAATCTGTCAGGAAGACTATGTGGAAGGCGAGATCATTGGAAGACTAGATTGCAGACACCTATACCACCTTGATTTCATTAAACAATGGTTGTTGCAAAAGAATAGTTGTCCAATTTGTAAGCGAATAGCTTTAGATGTTCATGAAGATGAGGATGAAAGTGACTGA 1680 0.3839 MHAVKKKLSRMAHQFCLANWNEDNSPTRDARALSYLIASNSPSSVAFNNPTGLAGNQTMLLNTNPTNNTTSHTTNEDYYHFPMVNPTITNISNYNDNQTSPSHDSSPPRLFGSSLILAPTTRRSTARYINTTRPSSMNSSMAQLGADASNYHQVQSRKTNNNNGISTSFDNSRNNDVVASATITSIGTGNAFLKRSRSSEFVRGESSNQSSQVGGAFRRRTNPPPPSFQHEIVNNNSNNSGFSRGETQVAVTTSPFPRNNNFLSSEVVSSLSSRSPRWEFNSFSNTNNNNNNNINTNLNIFDPTEQRFDDTFNHSTINVQQYVRLLPGGHVDRFLAPSIVHVRSNNFVPRGSQPPSNPSTSSNRLNPPSAPTVVESDQYMEPGTILAGQGNRRRGNNHIFTSTSPELRARRNRLRDEHLRAGGSMRRQDMLTMDYSIVLNVFDSFERINMLHNIVDWPYEALLALEEHIRRVETGLTEEEIHAYIETEIYVSNPNETSTQNKTCTICQEDYVEGEIIGRLDCRHLYHLDFIKQWLLQKNSCPICKRIALDVHEDEDESD 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03337 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 548 IPR013083 -
Vivi2g03337 559 ProSiteProfiles Zinc finger RING-type profile. 504 545 IPR001841 -
Vivi2g03337 559 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 208 549 IPR045191 GO:0061630
Vivi2g03337 559 MobiDBLite consensus disorder prediction 346 373 - -
Vivi2g03337 559 MobiDBLite consensus disorder prediction 346 375 - -
Vivi2g03337 559 MobiDBLite consensus disorder prediction 202 217 - -
Vivi2g03337 559 MobiDBLite consensus disorder prediction 199 247 - -
Vivi2g03337 559 MobiDBLite consensus disorder prediction 150 173 - -
Vivi2g03337 559 Pfam Ring finger domain 503 545 IPR001841 -
Vivi2g03337 559 SUPERFAMILY RING/U-box 486 548 - -
Vivi2g03337 559 MobiDBLite consensus disorder prediction 227 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03337 Vivi-Chr2 137356958 137359740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03337 383 549 C3H Transcription Factor Family AT2G15530 38.012 1.37e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03337 - - vvo:131650135 1038.48