Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03332 ATGTCAAGGCCTGTTGAGAAAATAGCAGAGATCAATGATGGAAAAGAGCTTTGGAAGATTGTTGTTAGGATTCACCACAGATGGAAAGTTGTCTCCAACAACAAGGAACATTTTGAAATGATCTTTGTTGACAAATTGGGAGATGATATTCATGTTGTTGTTCCAGCACCGCATGTGTCGGTGTTCACCGAAAAATGCTTATTAGGCCATACTTATGCTGTATCTAATTTTAAGGTGGTGCCTTATGTTCTGGCCTTCAGGGCATCGGGACACAAATATATGATAAAGTTTACTGCTGGAACGTCTGTTCTTGATGAAGACAAACATGAGATACCCCCGAAATCGATTTTATTTACAAGTTTTTCCGACATCATAACAGGGAGGTTTGACAAACATGTTCTGGTTCATGTCGTTGGAATGGTTGATAGTATTGGTTATGCACAGACTGAGTCAGGTGCAAAGAAGCAGCAAATTAGCATGATGTTACGTGATCACAGCAACAACATGTTGAACTGTACTCTGTGGGAATCATACGCGGATCAGTTCATCAAGTTTAACAAAGTTAGGGTTGCTGCATCACTCCCTACAGTTGTGTTGCTTCAGTATGCCAAAGTGAAGGAAGAAGGAAAGTATCCTCTGTCTGTGACAAACACCTACAATGTGACCCTTTTATGTGTTGATGCTGATTTTCCGGTCATGAAAGACTTTATTGATAGAATGCCTGAGGAGAGCAGGGTAACCCTGTCTGAACAACTTGGAGGGAATTCCCAATATTCCTCCCAAAGTTCTGAAAATCAACAGCTCACTCCTGTGCAAAAATTGTTCTCAAAGGCTGTTGTTTTGCCTATTGCTGAGATTATTCAACTTACGGATGTTACATTTTGTGCTACTGTCGCTACAACAAAATTATTAGTAGCATCTCCGTTTGGATGGTACTATCGTGCCTGTCATATGTGTCAATCTATAGCGCGTGGGGACAGCCCCCCCTTTGAGTGTGAAGCTGGTCATGAAACCATGGAGCGACTTCTTATGATGTTCAGGTATAAGATTGAAATTGAGGTTACTCACGGGGGCCAAAGCTGCAATTTTGTCTTCTGGAACAGAGAATGTGAAATGCTGTTGGGTTTATCTGCATCGCAACTTCGTAACACTATGATTCAGGCTGGAATTACTGATCCATTGGACTTTCCGTTAGCACTTGATCAGTTGTTGAAGTTGGAAATGGCTATGAAGGTTAAGTGGCATCCACGCTGGAAGAACTGTTCCGTCGTTATGATTATAAAAAATGATCCTATTATCCAGCAACTTAAGGAAAAATGGGGAACAGATGAGGAACCTATTCCAATCCAAACTGTCGTACCTGAGACTCTGGAGATTAAAGAGAGTGTTGATGAGGCTAAAACAGATGGCAATGAAGACTGTGAATTGGTTACAGTAATCTTCATCGTGGCATTGCAAGACCTGGAAATTACATCTGAGCACAAGCCTGATGCTGTCACACCTGGTGGTAAGAGGCATCTTCCTGCTGCATCAAGTGAATCCATTGATTTGGACGGATTACATGATGGGGAACTGTCATCTAACAAGCTGAAGAAGATAATTAAAATGGAGAAGATTGATTAG 1623 0.414 MSRPVEKIAEINDGKELWKIVVRIHHRWKVVSNNKEHFEMIFVDKLGDDIHVVVPAPHVSVFTEKCLLGHTYAVSNFKVVPYVLAFRASGHKYMIKFTAGTSVLDEDKHEIPPKSILFTSFSDIITGRFDKHVLVHVVGMVDSIGYAQTESGAKKQQISMMLRDHSNNMLNCTLWESYADQFIKFNKVRVAASLPTVVLLQYAKVKEEGKYPLSVTNTYNVTLLCVDADFPVMKDFIDRMPEESRVTLSEQLGGNSQYSSQSSENQQLTPVQKLFSKAVVLPIAEIIQLTDVTFCATVATTKLLVASPFGWYYRACHMCQSIARGDSPPFECEAGHETMERLLMMFRYKIEIEVTHGGQSCNFVFWNRECEMLLGLSASQLRNTMIQAGITDPLDFPLALDQLLKLEMAMKVKWHPRWKNCSVVMIIKNDPIIQQLKEKWGTDEEPIPIQTVVPETLEIKESVDEAKTDGNEDCELVTVIFIVALQDLEITSEHKPDAVTPGGKRHLPAASSESIDLDGLHDGELSSNKLKKIIKMEKID 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03332 540 MobiDBLite consensus disorder prediction 494 520 - -
Vivi2g03332 540 Gene3D - 109 249 IPR012340 -
Vivi2g03332 540 SUPERFAMILY Nucleic acid-binding proteins 5 103 IPR012340 -
Vivi2g03332 540 SUPERFAMILY Nucleic acid-binding proteins 294 414 IPR012340 -
Vivi2g03332 540 SUPERFAMILY Nucleic acid-binding proteins 118 243 IPR012340 -
Vivi2g03332 540 CDD RPA1_DBD_A_like 19 103 - -
Vivi2g03332 540 Gene3D - 254 437 IPR012340 -
Vivi2g03332 540 CDD RPA1_DBD_B_like 137 241 - -
Vivi2g03332 540 Gene3D - 2 104 IPR012340 -
Vivi2g03332 540 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03332 Vivi-Chr2 137193458 137196015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03332 5 328 Core DNA Replication Machinery Family AT5G45400 20.977 3.12e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03332 - - vvo:131613993 864.374