Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03329 ATGGGTCATCAATTCCGTTTAACAAATTGGAATGAAGACGAGAGTCCAACTCGTGATGTTAGGGATCCAAGATATCTGATGGCCTCCTATTCTCTTCCTTCTCTTGCTTTTAACAATCACACAAGATCATTTGGGACCAATCATCAAGTCGTACTTGATAATATCATGCAAAACAATCCTCTTCACTCATACATTACGAATAGTCAAGCTACTATTGATAATCATTATCATTCTACTATGGTAATTCCAACACCCATCAATATCAGTAATTATAATGATAATCAGACTTCTCCTTCTTCCAACTCGTCTCCACCGAGACTCTATGGTTCATCTCTAACTTTAGCTCCTACTTCCAGAAGTAGATTACCAAATTTTGTAAGAGGAGAGAGTTCAAATCAAGGTTCACAAGTTGGTGGAACTTCAAGAAGACGCACAAATCCTCCTCCTCATACTTTTCAACAAGAAAGTGTGAACAATAATAATTTCATGTCTTTTGAAGTGGGCTCATCTTCGTCCTCTCAAAGTCTAGGTAGGGGGTTTAGTGTTTATAACAACAGCAATAACAACTACAACAATAACAACAATTTGGATTTATTTGATTCTAATCAACAGGGAATTGATGATACATTTGTTCATAGCACTAATGCTCAACAACATGTAAGGCATTTACCTGAAGATCATGTGAGTCAATTTTTCACTCCATCTATTGCTCATGTGCAGTCTAATAGTTCTGTACCACGACAACCACAACCTCCTTCCGATCCTTCAACAATTAGTTACCGCGTAAACCCTTCTCCACCTCCTCATGGATCAATGTTCAATACTGCTGAAGAATTTGATAATCACATGGTGACTGGTACAACATTGTCTAGATCTGGGAATCTTCGTCGCTATAATAATCACATTCTCACCTTAACCTCTCCTGAACTTATGAACGAGAGAAACAGACTTAGGGATGAGGTCTTTAGCACCCTACAACATCTGCAGAATGGTGGTTCTGTACGGGTAGAGGATTTGCTGATACTAGATTACTCTATTGTGCTAAACGTTCTTGATTCTCAAGAACGTATCGACATGCTACATAGTATAGATGATTGGCCATATGAGGAAGACTATGTGGAAGGGGATATCACTGGAAGATTGGATTGTAGACACATATATCATTTTGAATGCATTAAACAATGGTTGCTGCTGAAGAATATTTGCCCAATCTGTAAGCACACAACTCTAAGAGTTAATGAAGATGTGGATGAAAGGGACTGA 1263 0.3824 MGHQFRLTNWNEDESPTRDVRDPRYLMASYSLPSLAFNNHTRSFGTNHQVVLDNIMQNNPLHSYITNSQATIDNHYHSTMVIPTPINISNYNDNQTSPSSNSSPPRLYGSSLTLAPTSRSRLPNFVRGESSNQGSQVGGTSRRRTNPPPHTFQQESVNNNNFMSFEVGSSSSSQSLGRGFSVYNNSNNNYNNNNNLDLFDSNQQGIDDTFVHSTNAQQHVRHLPEDHVSQFFTPSIAHVQSNSSVPRQPQPPSDPSTISYRVNPSPPPHGSMFNTAEEFDNHMVTGTTLSRSGNLRRYNNHILTLTSPELMNERNRLRDEVFSTLQHLQNGGSVRVEDLLILDYSIVLNVLDSQERIDMLHSIDDWPYEEDYVEGDITGRLDCRHIYHFECIKQWLLLKNICPICKHTTLRVNEDVDERD 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03329 420 MobiDBLite consensus disorder prediction 87 175 - -
Vivi2g03329 420 Pfam Ring finger domain 371 406 IPR001841 -
Vivi2g03329 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 368 413 IPR013083 -
Vivi2g03329 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 370 408 IPR045191 GO:0061630
Vivi2g03329 420 SUPERFAMILY RING/U-box 370 410 - -
Vivi2g03329 420 MobiDBLite consensus disorder prediction 239 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03329 Vivi-Chr2 137076143 137078389 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03329 312 412 C3H Transcription Factor Family AT2G15530 27.451 1.70e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03329 - - vvo:131632304 773.852