Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03320 ATGACCAACATAGAAGATAATTCAACCATAATTAGCTCTCATGATATACTTGAAACTGATTGTAATATCGATTATGCTGATACTGAAATACCAGTAAATCCCCCTTTAGAGCCTTACGAGGGTATGGAGTTTATGTCAATTGAAGATGCAAAGAGCTATTACACAAAGTATGCAAAAAGCAAAGGATTTAGCTTTCGTATGGGCCGTGTTACTAAATCAAGAACAAACGGTGTGATAATAGGCCATGAAATCCTTTGTTCAAAAGAAGGGTTTAGAGCAAAAAAATATGTGAAAAGAGATAGTATTGGTGGTGCACCACATGATGAAACAAGAATAGGATGCAAGGCAATGCTATATGTAAAGAAAAATGACGAGAAATGGATTGTTTATAAATTTGTAAGAGACCATAATCATGAACTTTTTTCTCCAAAAAGTTCAAGATTTCTTCGAGTGCATAGAAGGAAAACCAAAGTACAAAAAAAACTTATTGATGTGCTTGATGATTCGGGATTACGTCCTTGCAAAATAGCTTCTGTCTTATACACTGAAAGTGGCGGTATTGATAATGTTGGATTTAGCAAACAAGATGTTGTTAATTATTTAAGTGCAAAGAGACAGAAACAATTAGAAAAAGGAGATGCTCAATTGATGTTATCTTATTTTAAAGATTGCCAATTGAAGAATCCTGGATTTTTTTATGCATTTCAAATGGATGTAGAAGGAAAATTAGCAAATTGTTTTTGGGTTGATTCAAGGTCTAGAATGGCTTACAAGTATTTTGGTGATGTGGTAACCTTTGATCCAACATACTTAACAAATAGATATAAAATGCCTTTTGTTCCATTCACTGGAGTTAATCATCATCAACAATCAATTCTTTTTGGTTGTGCTCTACTGTGGGACGAAACTGAAGATAGTTTCTTTTGGTTGTTAAGTACTTGGTTAGAAGCAATGGATGGAGTTTGTCCTAAAACTATTATCACTGATCAAGACATGGCTATTACAAATGAAGTTGCAAGGGTGTTTCCAGGGGTTAATCATCATTATTGTATGTGGCACATTCAAAAGAAAGTCCCAGAGTATTTGAACTATATTTATCACGAGCATGGTGAATTCAAAAATCAATTTCATAAGTGTATTCATCAATCTATCACTGTAGAAGAATTTGATTCTGATTGGGAAGCAATGATAGATAAGTATGAGTTGCAAGATAATAAATGGTTAGAAAAGATATACTTTATACGAGAAAAATGGATTCCGGCTTTTGTACGTCAAGATTTTTGTGCTGGAATGTCTACCACCCAAAGGAGTGAAAGTATCAATAGTTTTTTTAAAGATTTTTTGAATTCAAGTACTCCATTGAGCAAATTTGTGACACAATATGAAAAGGCTCTTGATGCACGATATAATAGTGAAAGACAGAAGACTTTCAAAACATTGAATTCAAAACCCCTGTTGCGTACTTTATATCCCATGGAAGAAGAAGTCTCAAAGATTTATACAAGAAAAATGTTTAGGATATTTCAAGATGAGTTGGTTAGCTCTCAGATGTTTATAGCGGAAAAAATTGATTTTTCTACAGAAGTGTCGACATATAAGGTTCATGAAATTTGCAAAGAGAAGCCTAATTATCATGTGACTTTTAATATTATTTCAAAAGAAGTAAATTGTAGTTGTCACATGTTTGAGTTTATGGGAATTCTCTGTAGACATGGGTTAAATGTACTCATAAAGAAAAGTGTGCATTCTCTCCCTTCTCAATATGTTATGCGTCGTTGGACTATAAATGCTAAGAAAGAAAAAAGTAAGGGATTGGCAATTCAAGAACTGCATGAAGGGAAAAACAAAGATTCCAGTACTTCTTTGTTTAATAGTGTTATGGTTCACTCTCTTGAACTATCTGAAAGAGCTTCACGATCACCAAAACATCATGATATTGCAATTCAAGCTTTGCAAAACGTAATTGTGGAACTTGATCAATTGGATCTTGAAGAATCAAAAGAAGAACTTAATAACTCGACCATTGAAGTTACCTCAAAATTATCCAACAATAATATGACATTGCGTGATCCTCCAGTTAGAGCAACTAAAGGGCGGCCACGGACATTGCGAATGAAAGGAAGTTTAGAATTGGTCAAATCAGTTTTGTCTACTTGTAGTTATTGTAAGAAAAAAGGCCACAACAAACGTAAATGTCCAAGTTTAATTCAATCAAGGTGTAATATTATCAATGGTCAACTTTCAAACACTGGTGCTGCTAATGGTGAGGTTTCTGGTTTGATTCACTCACAGAAAACTGTGGAAGACAGTAACTACAACCAGTGA 2325 0.3376 MTNIEDNSTIISSHDILETDCNIDYADTEIPVNPPLEPYEGMEFMSIEDAKSYYTKYAKSKGFSFRMGRVTKSRTNGVIIGHEILCSKEGFRAKKYVKRDSIGGAPHDETRIGCKAMLYVKKNDEKWIVYKFVRDHNHELFSPKSSRFLRVHRRKTKVQKKLIDVLDDSGLRPCKIASVLYTESGGIDNVGFSKQDVVNYLSAKRQKQLEKGDAQLMLSYFKDCQLKNPGFFYAFQMDVEGKLANCFWVDSRSRMAYKYFGDVVTFDPTYLTNRYKMPFVPFTGVNHHQQSILFGCALLWDETEDSFFWLLSTWLEAMDGVCPKTIITDQDMAITNEVARVFPGVNHHYCMWHIQKKVPEYLNYIYHEHGEFKNQFHKCIHQSITVEEFDSDWEAMIDKYELQDNKWLEKIYFIREKWIPAFVRQDFCAGMSTTQRSESINSFFKDFLNSSTPLSKFVTQYEKALDARYNSERQKTFKTLNSKPLLRTLYPMEEEVSKIYTRKMFRIFQDELVSSQMFIAEKIDFSTEVSTYKVHEICKEKPNYHVTFNIISKEVNCSCHMFEFMGILCRHGLNVLIKKSVHSLPSQYVMRRWTINAKKEKSKGLAIQELHEGKNKDSSTSLFNSVMVHSLELSERASRSPKHHDIAIQALQNVIVELDQLDLEESKEELNNSTIEVTSKLSNNNMTLRDPPVRATKGRPRTLRMKGSLELVKSVLSTCSYCKKKGHNKRKCPSLIQSRCNIINGQLSNTGAANGEVSGLIHSQKTVEDSNYNQ 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03320 774 Pfam MULE transposase domain 263 357 IPR018289 -
Vivi2g03320 774 SMART 26again6 555 582 IPR006564 GO:0008270
Vivi2g03320 774 Pfam FAR1 DNA-binding domain 52 141 IPR004330 -
Vivi2g03320 774 Pfam SWIM zinc finger 554 577 IPR007527 GO:0008270
Vivi2g03320 774 ProSiteProfiles Zinc finger SWIM-type profile. 544 580 IPR007527 GO:0008270
Vivi2g03320 774 PANTHER OS01G0519700 PROTEIN 35 743 - -
Vivi2g03320 774 SUPERFAMILY Retrovirus zinc finger-like domains 718 737 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03320 Vivi-Chr2 136380006 136383426 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi2g03320 MULE 5.7e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03320 - - vvo:131646886 1578.53