Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03316 ATGGATGAGGACATTTTGAGAACTTTGGAAAGTGATGAAAGCAGCATGGACATGATGACAATGATGATGCAAATGGAAAAGTTTCCTGAATTCAATGAGCCTTTTTATAGCAACAACAACAATCTCAATCTCAATCTCAATAACACCGAAAATGAGTTTCCTTATGGAAACTCAAATGTAACCTATCCTCAACCATTCTCTTATCCTCAACAACCAATGACAATGACACCATCTCTTCAACACAACGGAGTTCAAATTCCATCCGGGAGAATCAACAACACTCCGCTTTCGTCGTACTCAGATAAAAAGAACTCAATGGCGGCCATGAGAGAGATGATATTCCGTATGGCGGTTATGCAACCGATTAATATAGACCCGGAAACAATCAAACCGCCAAAGAGAAAGAACGTGAAGATTTCGAAAGATCCACAAAGTGTAGCAGCGAGACATAGAAGAGAAAGAATTAGCGAAAGAATAAGAATCTTGCAGAGATTAGTCCCTGGTGGAACAAAAATGGACACAGCTTCAATGTTAGATGAAGCAATACATTATGTGAAGTTCTTGAAGAAACAAGTTCAAACATTGGAACAAGTTGGAGCAAATAGACCTATGAATGTTGCTGGATTCCCAGGAATGATTTCTAATGGAAATTTGAACTACTCTTCTTTTCTTAGAGGTTGTTCATCACCTTGTCAAATGGTGGGTCCCACTTCCAAACAAATGCTTAGTTGA 732 0.388 MDEDILRTLESDESSMDMMTMMMQMEKFPEFNEPFYSNNNNLNLNLNNTENEFPYGNSNVTYPQPFSYPQQPMTMTPSLQHNGVQIPSGRINNTPLSSYSDKKNSMAAMREMIFRMAVMQPINIDPETIKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGANRPMNVAGFPGMISNGNLNYSSFLRGCSSPCQMVGPTSKQMLS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03316 243 SMART finulus 145 194 IPR011598 GO:0046983
Vivi2g03316 243 CDD bHLH_AtIND_like 140 196 - -
Vivi2g03316 243 FunFam BHLH transcription factor 142 206 - -
Vivi2g03316 243 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 31 230 IPR045843 GO:0003700|GO:0006355
Vivi2g03316 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 198 IPR036638 GO:0046983
Vivi2g03316 243 Pfam Helix-loop-helix DNA-binding domain 149 188 IPR011598 GO:0046983
Vivi2g03316 243 MobiDBLite consensus disorder prediction 128 151 - -
Vivi2g03316 243 Gene3D - 138 206 IPR036638 GO:0046983
Vivi2g03316 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Vivi2g03316 243 MobiDBLite consensus disorder prediction 125 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03316 Vivi-Chr2 136246224 136247424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03316 25 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 56.477 6.97e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g03316 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03316 - - gmx:100796649 239.965