Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03310 ATGGATTTTATTCGCGGTGGTATGCTAGGTAGTGGAAGCTTCGCCACTGTCTATTTAGCCACACACACAAAACAATCTCTTAACTTTCCGTCTATCACCGCCGTCAAATCCTCCGAAAACTACACCTCACATTTTCTTCAAAAGGAGAAACACATACTAGATTGTTTAGGTTCATCTCCACATATTATCAAGTGTTTTGGTCACGATTTTACTTTTGAAAATGGCGAGGACTGTTATAATATATTTCTTGAATATGCCGCCGGTGGAACACTTTCCGATCAACTCAAGAATCACGGAGGAAAGTTTTCGGAAACTCTCATTCGCCGTTACACAAGGTCTGTTTTAGAAGGACTTAAACACATTCATGAAAACGGTTTTGTTCATTGTGACATAAAGCTAGAAAACATTCTTGTATTCGACAACGGAAATGTTAAGATTTCAGATTTTGGTCTAGCAAAGGAGACAGGTTTAGAACATGGTGAGAAGAAGTTGGAATTCAGAGGAACTCCTATATTTATGGCGCCGGAGTCGGTTAACGATAGCGTTTATGAATCTCCGGTGAATATTTGGGCTCTTGGTTGCGCCGTCGTGGAAATGATTACCGGTAAACCAGCATGGATTATGAGTAGCAAGGAAAATATGTGGTCGTTGATGATTCGTATTGGGATTGGAAAAGAATTACCGTTGATTCCAGATGAATTATCAGAAGAAGGCAAATATTTTCTTAAAAAGTGTTTTGTTAAAGATCCTTTGAAAAGATGGAGTGCTGAGATGCTATTGAAACACCCTTTTATTTCTGATGATGATGAAACTGTTTTATCTATGAAAGAGTTGTCATTACCATTAATGTCTCCAAGAACTCACTTTGATTTTATTCAATGGGCCTTTTCTACTGTGAAGACTTTACCGACGGAGAGACTCCAACAATTAGTTACATAG 939 0.3834 MDFIRGGMLGSGSFATVYLATHTKQSLNFPSITAVKSSENYTSHFLQKEKHILDCLGSSPHIIKCFGHDFTFENGEDCYNIFLEYAAGGTLSDQLKNHGGKFSETLIRRYTRSVLEGLKHIHENGFVHCDIKLENILVFDNGNVKISDFGLAKETGLEHGEKKLEFRGTPIFMAPESVNDSVYESPVNIWALGCAVVEMITGKPAWIMSSKENMWSLMIRIGIGKELPLIPDELSEEGKYFLKKCFVKDPLKRWSAEMLLKHPFISDDDETVLSMKELSLPLMSPRTHFDFIQWAFSTVKTLPTERLQQLVT 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03310 312 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Vivi2g03310 312 Coils Coil 307 312 - -
Vivi2g03310 312 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 4 270 - -
Vivi2g03310 312 ProSiteProfiles Protein kinase domain profile. 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03310 312 SMART serkin_6 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03310 312 Pfam Protein kinase domain 7 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03310 312 Gene3D Transferase(Phosphotransferase) domain 1 2 300 - -
Vivi2g03310 312 CDD STKc_MAPKKK 2 265 - -
Vivi2g03310 312 SUPERFAMILY Protein kinase-like (PK-like) 2 296 IPR011009 -
Vivi2g03310 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03310 Vivi-Chr2 135917117 135921621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03310 1 312 MAP Kinase Kinase Kinase AT3G50310 50.307 8.34e-111 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vivi2g03310 Pkinase 6.3e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03310 - - cam:101502416 412.92