Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03297 ATGGACGAGAACATTCTGAAAACCTTGGAAAGTGACGAAAGCAGCATGGACATGATGACAATGATGATGCAAATGGAAAAGTTTCCAGAATTCCATGAGCCTTTTTATAGCAACAACAACAATCTCAATCTCAATCTCAATAACACCGAAAATGAATTCCCTTATGGAAACTCAAACGTAACTTATCCTCAACCACCATTCTCTTATTCTCAACAAGGACAACCAATGACACAATCTCTTCAACATAACGGAGTTCATATGCCATCAGGAAGAATCAACAACGCTTCGTTCTCGTCGTACTCCGATAAGAAGAACTCAATGGCGGCCATGAGAGAGATGATATTCCATATGGCAGTTATGCAACCGATTAATATAGACCCAGAAACAATCAAACCACCAAAGAGAAAGAACGTGAAGATATCGAAAGATCCACAAAGTGTAGCAGCGAGACACAGAAGAGAGAGAATTAGCGAGAGAATAAGAATCTTGCAGAGATTAGTCCCTGGTGGAACAAAAATGGACACAGCTTCAATGTTAGATGAAGCAATACATTATGTGAAGTTCTTGAAGAAACAAGTTCAAACTTTGGAACAAGTTGGAGCAAATAGACCTATGAATGTTGTTGGATTCCCAGGAATGATTTCTAATGGAAATTTGAACTACTCTTCTTTTCTTAGAGGTTGCTCAACTTCATCACCTTATCAAATGGTGGGTCCCACATCCAAACAAATGCTTAGGTGA 741 0.39 MDENILKTLESDESSMDMMTMMMQMEKFPEFHEPFYSNNNNLNLNLNNTENEFPYGNSNVTYPQPPFSYSQQGQPMTQSLQHNGVHMPSGRINNASFSSYSDKKNSMAAMREMIFHMAVMQPINIDPETIKPPKRKNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGANRPMNVVGFPGMISNGNLNYSSFLRGCSTSSPYQMVGPTSKQMLR 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03297 246 Pfam Helix-loop-helix DNA-binding domain 150 189 IPR011598 GO:0046983
Vivi2g03297 246 MobiDBLite consensus disorder prediction 129 146 - -
Vivi2g03297 246 MobiDBLite consensus disorder prediction 126 146 - -
Vivi2g03297 246 FunFam BHLH transcription factor 143 206 - -
Vivi2g03297 246 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 31 232 IPR045843 GO:0003700|GO:0006355
Vivi2g03297 246 CDD bHLH_AtIND_like 141 197 - -
Vivi2g03297 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 199 IPR036638 GO:0046983
Vivi2g03297 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Vivi2g03297 246 SMART finulus 146 195 IPR011598 GO:0046983
Vivi2g03297 246 Gene3D - 139 206 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03297 Vivi-Chr2 135752823 135753819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03297 12 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 54.545 7.87e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi2g03297 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03297 - - gmx:100805427 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03297 2 135752823 135753819 Vivi2g03297 2 135752823 135753819 ECH