Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03291 ATGGAGCAGAGAAAACTTGTGGTTTTGGGTATCCCGTGGGATGTTGACACGGAGGGCTTGAAAGAATACATGAGCAAATTTGGTGAACTAGAAGATTGCATTGTCATGAAGGAGCGTTCAACTGGACGATCTCGTGGTTTTGGATATGTCACATTTGCTTCAGTGGATGACGCCAAGGAAGTATTGTCAGGTGAACATGTTCTTGGTAATAGGATGCTTGAAGTCAAAGTGGCTACACCAAAGGAGGAGATGAGGGCACCAGCCAAAAAAGTTACCAGAATTTTTGTGGCCAGGATTCCACAATCAGTAACAGAAGCAACTTTTAGAAGTCATTTTCAGAAATATGGAGATATAACAGATTTGTACATGCCAAAGGATCAAGGCTCAAAGATGCATCGTGGAATTGGTTTTATCACTTTTGCAAATGCAGAATCTGTGGAGAGTTTGATGTCAGAAACCCATGAGCTCGGAGGTACTGCTGTAGTGGTTGATCGAGCTACACCTAAGGAAGATGACATTAAGCCAACTGGCAGAATGTCACAGGGAGGATATGGTGCATACAATGCATATATTTCTACAGCAACTAGATATGCAGCACTAGGAGCTCCTACCTTGTACGACCATCCTGGCCCAATTTATGGAAGGGGAGAGCCTCGTCGGAGAATTAGCAAAAAGATTTTTGTTGGTCGTCTCCCTCCTGAAGCAAATTCTGACGATCTCCGTCAATATTTTGGAAGATTTGGCCGTATAGAAGATGTTTACATTCCTAGAGATCCTAAGAGAACAGGTCACAGGGGTTTTGGATTTGTTACCTTTGCTGAAGAAGGTGTAGCAGATCGTGTCTCTCGAAGGTCTCATGAGATCTGTGGACATCAGGTGGCAATAGATTCAGCCACACCTGTTGACGATGCTGGGCCCAGTGAAAATTTTATGATGAACAGTATGGAACCTTTTGGGGGATATGGTGGTCCAATGCGAAGTTATGGAAGGATGTATGGTGGTTTAGACTACGATGATTGGGGCTATGGAGTTCCCAGTGGGAGGCCATCAAGAGTAGATTATGAAGAGCAGCTTGGGAGGCCATCAAGAGCAGATTATCAAGAGCAGCTCGGAAGGCCATCAAGAGCAGATTGGAGGTATAGGCCATACTAG 1152 0.4453 MEQRKLVVLGIPWDVDTEGLKEYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGNRMLEVKVATPKEEMRAPAKKVTRIFVARIPQSVTEATFRSHFQKYGDITDLYMPKDQGSKMHRGIGFITFANAESVESLMSETHELGGTAVVVDRATPKEDDIKPTGRMSQGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSDDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFAEEGVADRVSRRSHEICGHQVAIDSATPVDDAGPSENFMMNSMEPFGGYGGPMRSYGRMYGGLDYDDWGYGVPSGRPSRVDYEEQLGRPSRADYQEQLGRPSRADWRYRPY 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03291 383 Gene3D - 83 195 IPR012677 -
Vivi2g03291 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Vivi2g03291 383 SMART rrm1_1 225 296 IPR000504 GO:0003723
Vivi2g03291 383 SMART rrm1_1 5 76 IPR000504 GO:0003723
Vivi2g03291 383 SMART rrm1_1 93 164 IPR000504 GO:0003723
Vivi2g03291 383 SUPERFAMILY RNA-binding domain, RBD 223 324 IPR035979 GO:0003676
Vivi2g03291 383 MobiDBLite consensus disorder prediction 346 383 - -
Vivi2g03291 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Vivi2g03291 383 FunFam RNA-binding family protein isoform 1 221 304 - -
Vivi2g03291 383 SUPERFAMILY RNA-binding domain, RBD 89 187 IPR035979 GO:0003676
Vivi2g03291 383 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 222 350 - -
Vivi2g03291 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 300 IPR000504 GO:0003723
Vivi2g03291 383 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Vivi2g03291 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 63 IPR000504 GO:0003723
Vivi2g03291 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 281 IPR000504 GO:0003723
Vivi2g03291 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Vivi2g03291 383 Gene3D - 220 304 IPR012677 -
Vivi2g03291 383 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Vivi2g03291 383 Gene3D - 1 82 IPR012677 -
Vivi2g03291 383 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03291 Vivi-Chr2 135654907 135661190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03291 6 274 Eukaryotic Initiation Factors Gene Family AT3G16380 24.549 3.47e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03291 K14411 - gmx:100795240 652.129