Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03277 ATGTCGCAGCGATCGGTGCCGGCGCCGTTTTTGACGAAGACGTATCAGATGGTGGATGATTTTGCGACGAGGGATGTGATTTCGTGGAATGAAAGTGGCGAAAGTTTTGTGGTTTGGAAACATGCGGATTTTGCTAGGGATTTGCTTCCTAAGTATTTTAAACACAATAATTTCTCCAGCTTTGTTCGCCAGCTCAATACATATGGGTTTCGAAAGGTAGTAGCAGACAAATGGGAATTCGCAAACGAAAATTTCAAACGAGGCCACAAAGAACTCCTCACCGAAATCAAACGCCGCAAAACCGTATCACAACCGTCGTCACAGCCTCCAGAAACCGAAAAAACCAGCGCCCACAACAACTCTCCGTCAAACTCCGACGACAACAACGGAGTTGGATCCACCTCCACAGTGCGATCAACCTCTTCCTCCAATTCAAAGAACCCCGGATCAGTAGAAACAACACCTCCACAGTACGTCAATTTATCGTCCGAGAACGAGAAACTGAAAAAGGAAAACGAGATATTGAGTTGGGAGTTAGCACGTGCGAAGCACAAGTGCGATGAGTTGGTGGCTTTTCTAAAAGACCGTTTGAACGTGGGACCCGATCAGATCGATCGCATTATGAAGGAAAAGAAGTGTGAGTCGGTTCAAAATGCGGTTGGTGAAGGTGAAGAAAATGGAAGAGATAGTTTGAAACTGTTTGGTGTTTGGTTGAAAGAAGAAAAGTATACAGAGAAAAGAAAGAGAAATTGTGAAGAACAATTGGGGTTTGGTGGGCCCAGGGCTAAAGTGACAAACAATGTTGTTGACTTTAGTGCTGTCAATGTTGTGAACATGATGAAAAGTGGCAAGATTTGTAACTGA 864 0.4433 MSQRSVPAPFLTKTYQMVDDFATRDVISWNESGESFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVADKWEFANENFKRGHKELLTEIKRRKTVSQPSSQPPETEKTSAHNNSPSNSDDNNGVGSTSTVRSTSSSNSKNPGSVETTPPQYVNLSSENEKLKKENEILSWELARAKHKCDELVAFLKDRLNVGPDQIDRIMKEKKCESVQNAVGEGEENGRDSLKLFGVWLKEEKYTEKRKRNCEEQLGFGGPRAKVTNNVVDFSAVNVVNMMKSGKICN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03277 287 MobiDBLite consensus disorder prediction 99 163 - -
Vivi2g03277 287 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi2g03277 287 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi2g03277 287 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi2g03277 287 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Vivi2g03277 287 FunFam Heat stress transcription factor B-4 2 100 - -
Vivi2g03277 287 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 210 IPR027725 -
Vivi2g03277 287 Coils Coil 158 185 - -
Vivi2g03277 287 MobiDBLite consensus disorder prediction 96 165 - -
Vivi2g03277 287 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi2g03277 287 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi2g03277 287 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi2g03277 287 Gene3D - 2 101 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03277 Vivi-Chr2 135311963 135314193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03277 2 287 HSF AT4G36990 50.338 1.75e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi2g03277 HSF_DNA-bind 1.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03277 K09419 - gmx:100791543 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03277 2 135311963 135314193 Vivi2g03277 2 135311963 135314193 ECH
Vivi2g03277 2 135311963 135314193 Vivi1g02887 1 62824475 62828155 PCT