Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03231 ATGTCGTCAACACAAACTTCGCCGTGTGCGGCGTGCAAGTTTCTCCGGCGAAAATGCACGACAGAGTGCGTATTTGCACCGTATTTTCCACCAGATAACCCTCAAAGGTTTGCATACGTACACAAAGTTTTCGGTGCCAGTAACGTGGCGAAGCTGCTTAACGAGCTTACCCAGAGTCAGCGTGAGGACGCCGTTAAGTCACTAGCTTACGAAGCCGAGGCGCGGCTTCGAGACCCAGTTTACGGCTGCGTTGGTCTTATCTCTCTTCTTCAACACAAGTTACGAGCGATCCAAGGTGAACTAAATAATGCTAAAAAAGAACTTGCAACTTATATTGGTCCTCAAGCTCTACAGGGAATTCCTACGAGTATTCTTCAACCGCAGCATATTCAAAGCAACCCGTTTTGTAATTCTCTTTACCCTTATAATGGTAATGTTCCGGTGGTGACGGCGGCGAATCAGATGGTGATTCGTGACCCACAACCTATGACACCTCAACATCAGATCTTGGAAGCTCAACAATTGGCTGCAGCTGTTGCTGCTAGAGAGCAACAAGAGATTTATAGGACTTTTGAAAATCAACAACAGCAACAGCAAGAGTTTTTGAGGTTCAGTGGTGGGTTTGATGTGGATTCGGTTTCTAATTCTCCTGGTGGGTTCAACCAAGTGTCCCCAGTTTCTGCTGCTGCTGTTGGGGTTGTTTCTGATCAATTGTCTCCTTCCTTGGCCTTGGGGTCTTTTGACAATACTTATCACCACATGCAACAAACACAACAAGGACAAGGAGAGTCTCATCCGCATCATCATCATCATAACCTTAATCATCATCTTCCACTTCAAGCACAGCTATTGCTTCCTCCTCAGCAGAAGCAAGCACAGCCACAAACTCAACATTCATCATTAACACACCACCAACAACAGACGGAAAGCGAGGAGTGTAGGAGTGTTGGACTTGGTCCATCTTGTTGA 969 0.4623 MSSTQTSPCAACKFLRRKCTTECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELTQSQREDAVKSLAYEAEARLRDPVYGCVGLISLLQHKLRAIQGELNNAKKELATYIGPQALQGIPTSILQPQHIQSNPFCNSLYPYNGNVPVVTAANQMVIRDPQPMTPQHQILEAQQLAAAVAAREQQEIYRTFENQQQQQQEFLRFSGGFDVDSVSNSPGGFNQVSPVSAAAVGVVSDQLSPSLALGSFDNTYHHMQQTQQGQGESHPHHHHHNLNHHLPLQAQLLLPPQQKQAQPQTQHSSLTHHQQQTESEECRSVGLGPSC 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03231 322 Coils Coil 87 107 - -
Vivi2g03231 322 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Vivi2g03231 322 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 288 - -
Vivi2g03231 322 MobiDBLite consensus disorder prediction 287 304 - -
Vivi2g03231 322 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Vivi2g03231 322 MobiDBLite consensus disorder prediction 287 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03231 Vivi-Chr2 134018386 134022213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03231 3 233 AS2 family AT5G66870 52.823 2.21e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vivi2g03231 LOB 4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03231 - - tpra:123910973 440.269