Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03226 ATGGGGGAACTGAACTTGGATTTGACTTTAGCCTCTGTTCCCAAAACCGTTTCTCATTTCCTCAACGAAGTTTCTCTCACCAAAGACTCATCCATGAAACTTTCAATGCTCGATGACTTGGTTCGTAGATTGGAAGAAGAAATGAACAAAGTCCTCGCTTTCAAACGCGAACTTCCTCTTTGCATACTCCTCGTTAACGATGCTATTGCAAGATTGAAGGATGAAAAGGAAAAAGTTAGGTTGATCAAAATGCGAGATCCAGTTCTGATGAATGAAAAGTCTGATAATAAGATGAATTGGATGAGTTCAGTTCAGCTTTGGACTGCTCAGACAAAATCGAAGAATGAAGATGGTGATAGGTCTGTGTTACAGAAGAGTAATGGTGGAGGGGTATTTATGTCATTTAATGAAAATACTCGTGTTCCTTTGAAGGAGGTTTCTCAGGTTCCGAGTTTTAGTTTGATGTCTGAAGTAAGTCATGGAAATTCTAAGAGTGGTTGTGATCGGAGTAGTTCTGGTTCGTCTTTGCTGCGCGTTGAGATACAGAATCAACAGCCGCAGCCACCTCAGCCTTTGCTGCAGGGTTCGAGGAAACAAAGGCGGAGCTGGTCGTCTGAGCTTCATCGACGATTTGTTGATGCTCTTCAGCAGCTTGGTGGAGCACATGCCACTCCTAAGCAAATTAGGGAAAAGATGCAGGTGGATGGATTAACAAATGATGAAGTGAAAAGCCATTTGCAGAAATACAGGCTTCATGTTAGAAGATTCCCAGTTTCTTCAATTGAGGAGGCTAATAAACTAGCCTTATACATGATCCAAGATCAATGTGGAGATACCCCAAAGGGAAACTTATCAGAGTCTGTTTCACCACAGGGTCCTCTTACTCCAATTCTCATTGGAGGATCTGCTAAAGGTCTCTCGAGCACTGTAAGAAACAGTGTGGATGCAGAAGATGAACAATCAGATTGCAGGAATTGGAAAGATGATCAGGAGCAGCAACATGAAGCTGAATGA 1014 0.4241 MGELNLDLTLASVPKTVSHFLNEVSLTKDSSMKLSMLDDLVRRLEEEMNKVLAFKRELPLCILLVNDAIARLKDEKEKVRLIKMRDPVLMNEKSDNKMNWMSSVQLWTAQTKSKNEDGDRSVLQKSNGGGVFMSFNENTRVPLKEVSQVPSFSLMSEVSHGNSKSGCDRSSSGSSLLRVEIQNQQPQPPQPLLQGSRKQRRSWSSELHRRFVDALQQLGGAHATPKQIREKMQVDGLTNDEVKSHLQKYRLHVRRFPVSSIEEANKLALYMIQDQCGDTPKGNLSESVSPQGPLTPILIGGSAKGLSSTVRNSVDAEDEQSDCRNWKDDQEQQHEAE 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03226 337 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 252 IPR006447 GO:0003677
Vivi2g03226 337 MobiDBLite consensus disorder prediction 280 337 - -
Vivi2g03226 337 Coils Coil 37 57 - -
Vivi2g03226 337 Coils Coil 327 337 - -
Vivi2g03226 337 Gene3D - 195 256 - -
Vivi2g03226 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 327 IPR044787 GO:0003700|GO:0006355
Vivi2g03226 337 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Vivi2g03226 337 MobiDBLite consensus disorder prediction 315 337 - -
Vivi2g03226 337 FunFam Two-component response regulator 194 256 - -
Vivi2g03226 337 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Vivi2g03226 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Vivi2g03226 337 MobiDBLite consensus disorder prediction 182 200 - -
Vivi2g03226 337 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03226 Vivi-Chr2 133915237 133917516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03226 1 247 G2-like Transcription Factor Family AT4G37180 45.896 5.85e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi2g03226 Myb_DNA-binding 2.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03226 - - pvu:PHAVU_002G021400g 363.614