Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03225 ATGGGGGAACTGAACTTGGATTTGACTTTAGCCTCTGTTCCCAAAACCGTTTCTCATTTCCTCAACGAAGTTTCTCTCACCAAAGACTCATCCATGAAACTTTCAATGCTCGATGACTTGGTTCGTAGATTGGAAGAAGAAATGAACAAAGTCCTCGCTTTCAAACGCGAACTTCCTCTTTGCATACTCCTCGTTAACGATGCTATTGCAAGATTGAAGGATGAAAAGGAAAAAGTTAGGTTGATCAAAATGCGAGATCCAGTTCTGATGAATGAAAAGTCTGATAATAAGATGAATTGGATGAGTTCAGTTCAGCTTTGGACTGCTCAGACAAAATCGAAGAATGAAGATGGTGATAGGTCTGTGTTACAGAAGAGTAATGGTGGAGGGGTATTTATGTCATTTAATGAAAATACTCGTGTTCCTTTGAAGGAGGTTTCTCAGGTTCCGAGTTTTAGTTTGATGTCTGAAGTAAGTCATGGAAATTCTAAGAGTGGTTGTGATCGGAGTAGTTCTGGTTCGTCTTTGCTGCGCGTTGAGATACAGAATCAACAGCCGCAGCCACCTCAGCCTTTGCTGCAGGGTTCGAGGAAACAAAGGCGGAGCTGGTCGTCTGAGCTTCATCGACGATTTGTTGATGCTCTTCAGCAGCTTGGTGGAGCACATGCAGCCACTCCTAAGCAAATTAGGGAAAAGATGCAGGTGGATGGATTAACAAATGATGAAGTGAAAAGCCATTTGCAGAAATACAGGCTTCATGTTAGAAGATTCCCAGTTTCTTCAATTGAGGAGGCTAATAAACTAGCCTTATACATGATCCAAGATCAATGTGGAGATACCCCAAAGGGAAACTTATCAGAGTCTGTTTCACCACAGGGTCCTCTTACTCCAATTCTCATTGGAGGATCTGCTAAAGGTCTCTCGAGCACTGTAAGAAACAGTGTGGATGCAGAAGATGAACAATCAGATTGCAGGAATTGGAAAGATGATCAGGAGCAGCAACATGAAGCTGAATGA 1017 0.4248 MGELNLDLTLASVPKTVSHFLNEVSLTKDSSMKLSMLDDLVRRLEEEMNKVLAFKRELPLCILLVNDAIARLKDEKEKVRLIKMRDPVLMNEKSDNKMNWMSSVQLWTAQTKSKNEDGDRSVLQKSNGGGVFMSFNENTRVPLKEVSQVPSFSLMSEVSHGNSKSGCDRSSSGSSLLRVEIQNQQPQPPQPLLQGSRKQRRSWSSELHRRFVDALQQLGGAHAATPKQIREKMQVDGLTNDEVKSHLQKYRLHVRRFPVSSIEEANKLALYMIQDQCGDTPKGNLSESVSPQGPLTPILIGGSAKGLSSTVRNSVDAEDEQSDCRNWKDDQEQQHEAE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03225 338 MobiDBLite consensus disorder prediction 316 338 - -
Vivi2g03225 338 SUPERFAMILY Homeodomain-like 196 256 IPR009057 -
Vivi2g03225 338 Coils Coil 37 57 - -
Vivi2g03225 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 255 IPR017930 -
Vivi2g03225 338 Pfam Myb-like DNA-binding domain 200 251 IPR001005 -
Vivi2g03225 338 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 253 IPR006447 GO:0003677
Vivi2g03225 338 MobiDBLite consensus disorder prediction 281 338 - -
Vivi2g03225 338 MobiDBLite consensus disorder prediction 182 200 - -
Vivi2g03225 338 FunFam Myb family transcription factor 197 255 - -
Vivi2g03225 338 Gene3D - 197 254 - -
Vivi2g03225 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 328 IPR044787 GO:0003700|GO:0006355
Vivi2g03225 338 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03225 Vivi-Chr2 133915237 133917516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03225 1 248 G2-like Transcription Factor Family AT4G37180 45.896 8.38e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi2g03225 Myb_DNA-binding 3.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03225 - - pvu:PHAVU_002G021400g 368.237