Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03224 ATGGGGGAACTGAACTTGGATTTGACTTTAGCCTCTGTTCCCAAAACCGTTTCTCATTTCCTCAACGAAGTTTCTCTCACCAAAGACTCATCCATGAAACTTTCAATGCTCGATGACTTGGTTCGTAGATTGGAAGAAGAAATGAACAAAGTCCTCGCTTTCAAACGCGAACTTCCTCTTTGCATACTCCTCGTTAACGATGCTATTGCAAGATTGAAGGATGAAAAGGAAAAAGTTAGGTTGATCAAAATGCGAGATCCAGTTCTGATGAATGAAAAGTCTGATAATAAGATGAATTGGATGAGTTCAGTTCAGCTTTGGACTGCTCAGACAAAATCGAATGAAGATGGTGATAGGTCTGTGTTACAGAAGAGTAATGGTGGAGGGGTATTTATGTCATTTAATGAAAATACTCGTGTTCCTTTGAAGGAGGTTTCTCAGGTTCCGAGTTTTAGTTTGATGTCTGAAGTAAGTCATGGAAATTCTAAGAGTGGTTGTGATCGGAGTAGTTCTGGTTCGTCTTTGCTGCGCGTTGAGATACAGAATCAACAGCCGCAGCCACCTCAGCCTTTGCTGCAGGGTTCGAGGAAACAAAGGCGGAGCTGGTCGTCTGAGCTTCATCGACGATTTGTTGATGCTCTTCAGCAGCTTGGTGGAGCACATGCAGCCACTCCTAAGCAAATTAGGGAAAAGATGCAGGTGGATGGATTAACAAATGATGAAGTGAAAAGCCATTTGCAGAAATACAGGCTTCATGTTAGAAGATTCCCAGTTTCTTCAATTGAGGAGGCTAATAAACTAGCCTTATACATGATCCAAGATCAATGTGGAGATACCCCAAAGGGAAACTTATCAGAGTCTGTTTCACCACAGGGTCCTCTTACTCCAATTCTCATTGGAGGATCTGCTAAAGGTCTCTCGAGCACTGTAAGAAACAGTGTGGATGCAGAAGATGAACAATCAGATTGCAGGAATTGGAAAGATGATCAGGAGCAGCAACATGAAGCTGAATGA 1014 0.425 MGELNLDLTLASVPKTVSHFLNEVSLTKDSSMKLSMLDDLVRRLEEEMNKVLAFKRELPLCILLVNDAIARLKDEKEKVRLIKMRDPVLMNEKSDNKMNWMSSVQLWTAQTKSNEDGDRSVLQKSNGGGVFMSFNENTRVPLKEVSQVPSFSLMSEVSHGNSKSGCDRSSSGSSLLRVEIQNQQPQPPQPLLQGSRKQRRSWSSELHRRFVDALQQLGGAHAATPKQIREKMQVDGLTNDEVKSHLQKYRLHVRRFPVSSIEEANKLALYMIQDQCGDTPKGNLSESVSPQGPLTPILIGGSAKGLSSTVRNSVDAEDEQSDCRNWKDDQEQQHEAE 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03224 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 194 254 IPR017930 -
Vivi2g03224 337 Pfam Myb-like DNA-binding domain 199 250 IPR001005 -
Vivi2g03224 337 SUPERFAMILY Homeodomain-like 195 255 IPR009057 -
Vivi2g03224 337 FunFam Myb family transcription factor 196 254 - -
Vivi2g03224 337 MobiDBLite consensus disorder prediction 280 337 - -
Vivi2g03224 337 Coils Coil 37 57 - -
Vivi2g03224 337 MobiDBLite consensus disorder prediction 181 204 - -
Vivi2g03224 337 MobiDBLite consensus disorder prediction 181 199 - -
Vivi2g03224 337 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 252 IPR006447 GO:0003677
Vivi2g03224 337 MobiDBLite consensus disorder prediction 315 337 - -
Vivi2g03224 337 Gene3D - 196 253 - -
Vivi2g03224 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 327 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03224 Vivi-Chr2 133915236 133917516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03224 1 247 G2-like Transcription Factor Family AT4G37180 45.149 3.14e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi2g03224 Myb_DNA-binding 3.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03224 - - pvu:PHAVU_002G021400g 363.229