Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03220 ATGGATATGCCGCCGCCGATCATGCATGACAGTGACCGTTACGACTTCGTTCGTGATATCGGATCGGGGAATTTCGGTGTCGCCAGACTCATGACTGATAAACTCACCAAAGAGCTTGTTGCTGTTAAGTATATCGAACGCGGTGATAAGATTGATGAAAATGTTAAGAGAGAAATAATCAATCACAGGTCTCTAAGACATCCTAATATTGTCAGGTTTAAGGAGGTCATTCTAACACCTACTCATCTGGCCATTGTAATGGAATATGCATCTGGAGGAGAAATGTTTGAGCGAATCAGCAAAGCAGGGCGTTTTACTGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGAGTCAGCTATTGTCATTCAATGCAAGTATGTCATCGAGATCTGAAGCTGGAAAACACGTTGTTGGATGGAGACCCAGCACTTCATCTCAAGATTTGTGATTTTGGATACTCCAAATCTTCAGTGCTTCATTCACAGCCAAAGTCAACTGTGGGAACTCCTGCTTATATCGCTCCCGAAGTACTTCTGAAGCAAGAGTACGATGGAAAGATTGCCGATGTCTGGTCATGTGGTGTAACCTTATACGTGATGCTAGTGGGGTCATATCCTTTTGAAGATCCCGATAATCCGAAGGATTTCCGGAAAACAATTCAGAGGGTTCTCAGTGTCCAGTATTCCGTACCAGACTTTGTTCAAATATCTTCTGAATGTCGCGACATTATATCAAGAATCTTTGTTTTTGACCCTGCTGAGAGAATCACCATTCCAGAGATAATGAAAAACGAATGGTTTCGAAAGAATCTTCCTGCTGACTTGGTGAATGAAAATATAAGGGATAACCAATTTGAAGAGCCAGATCAGCCTATGCAGAGTATGGATACGATCATGCAGATAATTTCAGAAGCTACCATACCAGCAGCTGGGAGCTATTATTTAGAACGGTTTATCGATGTGGATGAAGATATGGATGAAATAGATTCTGACTATGAACTTGATGTAGATAGCAGTGGTGAGATTGTATATGCCATATAA 1050 0.4152 MDMPPPIMHDSDRYDFVRDIGSGNFGVARLMTDKLTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGEMFERISKAGRFTEDEARFFFQQLISGVSYCHSMQVCHRDLKLENTLLDGDPALHLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKIADVWSCGVTLYVMLVGSYPFEDPDNPKDFRKTIQRVLSVQYSVPDFVQISSECRDIISRIFVFDPAERITIPEIMKNEWFRKNLPADLVNENIRDNQFEEPDQPMQSMDTIMQIISEATIPAAGSYYLERFIDVDEDMDEIDSDYELDVDSSGEIVYAI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03220 349 Gene3D Transferase(Phosphotransferase) domain 1 90 277 - -
Vivi2g03220 349 SMART serkin_6 14 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03220 349 ProSiteProfiles Protein kinase domain profile. 14 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03220 349 PANTHER SERINE/THREONINE KINASE 13 293 - -
Vivi2g03220 349 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Vivi2g03220 349 SUPERFAMILY Protein kinase-like (PK-like) 12 304 IPR011009 -
Vivi2g03220 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vivi2g03220 349 Pfam Protein kinase domain 14 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi2g03220 349 FunFam Serine/threonine-protein kinase SRK2E 5 89 - -
Vivi2g03220 349 FunFam Serine/threonine-protein kinase SRK2E 90 278 - -
Vivi2g03220 349 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03220 Vivi-Chr2 133833893 133838576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03220 13 274 CBL-interacting serine-threonine protein kinases AT5G25110 44.727 1.26e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vivi2g03220 Pkinase 1.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03220 K14498 - gmx:100783967 606.675