Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03171 ATGGGTTGGCTTACCAAGTTTCTCAATGGCTCTAATCATCGAATTTTGCGAGGTCAATACAATGGCAAACATGGTGATAATAGAATTTGGGATACTCAACATAGTTTAGTGGATGATTTGACGGATGTCGAGAAAGAAGATATCAACCGTGCTATTGCACTCTCTCTATCAGAGGAGGATCTGAAAGGGAAGAAAGTTGTTGAGGACGGCTCTCAGTCTGAAGAAGACAATGAACTTTGTAAACTTGATGAGGAAGATGAGAATGTTGGTAAAGGTCGACGAGATGACGATGAGAATGTTGGTAAAGTTCGACGAGATGAAGATGAACTGCTAGCTAAAATTCAGCAGGAGGAAAATGAACGCCGTGCCAAAGATCAACTTGAGGAAGATGAGGAACTTGCTAAGGCAATTCAATTAAGTTTGAACGTTGGTTCTCCTCCTCGACATGGCAATGATTCTTTATCTCAACCTCCTTCCCCCCTCTTTCCACCTGGATTCAGAATCTGTGCTGGATGCAATGCTGAGATTGGCCATGGGAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCACAATGCTTCTGTTGCCATACTTGCCATCTGCCAATCACTGATTACGAGTTTTCGATGAATAGCAACCGTCCTTACCATAAATCCTGCTACAAGGAGAAGCATCATCCAAGATGCGATGTTTGCAAGAATTTTATCCCGGCTAATTCAGCTGGTCTCATTGAGTATAGAGCTCACCCTTTCTGGATACAAAAATACTGTCCAACACACGAGCTCGATGGCACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGCCAAAGGATTCAAAATATATTTTGCTTGATGATGGTCGAAAGCTATGTCTCGAGTGTCTTGACTCGGCAATAATGGATAGTCATGAATGCCAACCTCTCTACCTTGAAATACTAGATTTTTACGAAGGTTTAAATATGAAATTGGAGCAGCAAGTTCCTATGCTTTTGGTCGAGAGACAGGCATTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCATTTACCTGAAACTAGAGGACTATGCTTGTCGGAAGAGCAGACTGTCACCACCATTTTAAAAAGACCAAAGATAGGGGCAGGACACCGAGTCACGGACATGATAACTGAGCCTTATAGACTGACCCGTCGATGTGAGGTGACAGCCGTTCTTGTTTTGTATGGCCTACCTAGGTTGTTGACCGGATCAATCCTAGCTCACGAGATAATGCATGCATGGCTAAGGCTTAAAGGTTATCCGAACCTGAGTCCAGAAGTTGAAGAGGGAATCTGCCAAGTCTTGGCTCACATGTGGTTAGAATCAGAGCTCTATTCTGGATCTGGGAATAATAACGCACCATCTTCGTCTTCATCATCGCCGTCGTCAATACCACCGTCCGCTGCTGCGTCATCAAAGAAGGGTAAACGGTCTGATTTTGAGAAGAAACTTGGGGAGTTTTTCAAACACCAGATTGAGTCCGATACCTCGTCAGCCTATGGAGATGGATTCAGATTGGGTAACAAGGCAGTACTTAAGTATGATCTCAAAAGTACCCTTGATCATATCCATTTGACCGGAACTTTTCCGTGTTGA 1620 0.4383 MGWLTKFLNGSNHRILRGQYNGKHGDNRIWDTQHSLVDDLTDVEKEDINRAIALSLSEEDLKGKKVVEDGSQSEEDNELCKLDEEDENVGKGRRDDDENVGKVRRDEDELLAKIQQEENERRAKDQLEEDEELAKAIQLSLNVGSPPRHGNDSLSQPPSPLFPPGFRICAGCNAEIGHGRFLSCMGGVWHPQCFCCHTCHLPITDYEFSMNSNRPYHKSCYKEKHHPRCDVCKNFIPANSAGLIEYRAHPFWIQKYCPTHELDGTPRCCSCERMEPKDSKYILLDDGRKLCLECLDSAIMDSHECQPLYLEILDFYEGLNMKLEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILKRPKIGAGHRVTDMITEPYRLTRRCEVTAVLVLYGLPRLLTGSILAHEIMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGSGNNNAPSSSSSSPSSIPPSAAASSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNKAVLKYDLKSTLDHIHLTGTFPC 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03171 539 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 128 147 IPR003903 -
Vivi2g03171 539 SMART lim_4 168 220 IPR001781 -
Vivi2g03171 539 ProSiteProfiles LIM domain profile. 167 227 IPR001781 -
Vivi2g03171 539 FunFam Protein DA1-related 1 163 222 - -
Vivi2g03171 539 MobiDBLite consensus disorder prediction 64 106 - -
Vivi2g03171 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 250 - -
Vivi2g03171 539 CDD LIM_DA1 169 221 - -
Vivi2g03171 539 Gene3D Cysteine Rich Protein 166 226 - -
Vivi2g03171 539 Pfam LIM domain 169 224 IPR001781 -
Vivi2g03171 539 SMART uim 128 147 IPR003903 -
Vivi2g03171 539 SMART uim 43 62 IPR003903 -
Vivi2g03171 539 Coils Coil 100 133 - -
Vivi2g03171 539 MobiDBLite consensus disorder prediction 458 485 - -
Vivi2g03171 539 MobiDBLite consensus disorder prediction 84 106 - -
Vivi2g03171 539 ProSitePatterns LIM zinc-binding domain signature. 169 203 IPR001781 -
Vivi2g03171 539 Pfam Protein DA1 318 533 IPR022087 -
Vivi2g03171 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 162 194 - -
Vivi2g03171 539 PANTHER PROTEIN DA1-RELATED 2 3 538 IPR045218 -
Vivi2g03171 539 MobiDBLite consensus disorder prediction 458 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03171 Vivi-Chr2 132325443 132333918 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g03171 DA1-like 1.4e-102 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03171 - - vvo:131652152 1018.07