Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03170 ATGGGTTGGCTTACCAAGTTTCTCAATGGCTCTAATCATCGAATTTTGCGAGGTCAATACAATGGCAAACATGGTGATAATAGAATTTGGGATACTCAACATAGTTTAGTGGATGATTTGACGGATGTCGAGAAAGAAGATATCAACCGTGCTATTGCACTCTCTCTATCAGAGGAGGATCTGAAAGGGAAGAAAGTTGTTGAGGACGGCTCTCAGTCTGAAGAAGACAATGAACTTTGTAAACTTGATGAGGAAGATGAGAATGTTGGTAAAGGTCGACGAGATGACGATGAGAATGTTGGTAAAGTTCGACGAGATGAAGATGAACTGCTAGCTAAAATTCAGCAGGAGGAAAATGAACGCCGTGCCAAAGATCAACTTGAGGAAGATGAGGAACTTGCTAAGGCAATTCAATTAAGTTTGAACGTTGGTTCTCCTCCTCGACATGGCAATGATTCTTTATCTCAACCTCCTTCCCCCCTCTTTCCACCTGGATTCAGAATCTGTGCTGGATGCAATGCTGAGATTGGCCATGGGAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCACAATGCTTCTGTTGCCATACTTGCCATCTGCCAATCACTGATTACGAGTTTTCGATGAATAGCAACCGTCCTTACCATAAATCCTGCTACAAGGAGAAGCATCATCCAAGATGCGATGTTTGCAAGAATTTTATCCCGGCTAATTCAGCTGGTCTCATTGAGTATAGAGCTCACCCTTTCTGGATACAAAAATACTGTCCAACACACGAGCTCGATGGCACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGCCAAAGGATTCAAAATATATTTTGCTTGATGATGGTCGAAAGCTATGTCTCGAGTGTCTTGACTCGGCAATAATGGATAGTCATGAATGCCAACCTCTCTACCTTGAAATACTAGATTTTTACGAAGGTTTAAATATGAAATTGGAGCAGCAAGTTCCTATGCTTTTGGTCGAGAGACAGGCATTGAATGAGGCCATGGAGGGAGAAAAGAATATTTTAAAAAGACCAAAGATAGGGGCAGGACACCGAGTCACGGACATGATAACTGAGCCTTATAGACTGACCCGTCGATGTGAGGTGACAGCCGTTCTTGTTTTGTATGGCCTACCTAGGTTGTTGACCGGATCAATCCTAGCTCACGAGATAATGCATGCATGGCTAAGGCTTAAAGGTTATCCGAACCTGAGTCCAGAAGTTGAAGAGGGAATCTGCCAAGTCTTGGCTCACATGTGGTTAGAATCAGAGCTCTATTCTGGATCTGGGAATAATAACGCACCATCTTCGTCTTCATCATCGCCGTCGTCAATACCACCGTCCGCTGCTGCGTCATCAAAGAAGGGTAAACGGTCTGATTTTGAGAAGAAACTTGGGGAGTTTTTCAAACACCAGATTGAGTCCGATACCTCGTCAGCCTATGGAGATGGATTCAGATTGGGTAACAAGGCAGTACTTAAGTATGATCTCAAAAGTACCCTTGATCATATCCATTTGACCGGAACTTTTCCGTGTTGA 1557 0.4361 MGWLTKFLNGSNHRILRGQYNGKHGDNRIWDTQHSLVDDLTDVEKEDINRAIALSLSEEDLKGKKVVEDGSQSEEDNELCKLDEEDENVGKGRRDDDENVGKVRRDEDELLAKIQQEENERRAKDQLEEDEELAKAIQLSLNVGSPPRHGNDSLSQPPSPLFPPGFRICAGCNAEIGHGRFLSCMGGVWHPQCFCCHTCHLPITDYEFSMNSNRPYHKSCYKEKHHPRCDVCKNFIPANSAGLIEYRAHPFWIQKYCPTHELDGTPRCCSCERMEPKDSKYILLDDGRKLCLECLDSAIMDSHECQPLYLEILDFYEGLNMKLEQQVPMLLVERQALNEAMEGEKNILKRPKIGAGHRVTDMITEPYRLTRRCEVTAVLVLYGLPRLLTGSILAHEIMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGSGNNNAPSSSSSSPSSIPPSAAASSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNKAVLKYDLKSTLDHIHLTGTFPC 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03170 518 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 128 147 IPR003903 -
Vivi2g03170 518 SMART lim_4 168 220 IPR001781 -
Vivi2g03170 518 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 162 194 - -
Vivi2g03170 518 ProSiteProfiles LIM domain profile. 167 227 IPR001781 -
Vivi2g03170 518 MobiDBLite consensus disorder prediction 64 106 - -
Vivi2g03170 518 CDD LIM_DA1 169 221 - -
Vivi2g03170 518 MobiDBLite consensus disorder prediction 437 464 - -
Vivi2g03170 518 FunFam Protein DA1-related 1 163 222 - -
Vivi2g03170 518 SMART uim 128 147 IPR003903 -
Vivi2g03170 518 SMART uim 43 62 IPR003903 -
Vivi2g03170 518 Pfam Protein DA1 346 512 IPR022087 -
Vivi2g03170 518 Coils Coil 100 133 - -
Vivi2g03170 518 Gene3D Cysteine Rich Protein 166 226 - -
Vivi2g03170 518 MobiDBLite consensus disorder prediction 437 456 - -
Vivi2g03170 518 PANTHER PROTEIN DA1-RELATED 2 3 517 IPR045218 -
Vivi2g03170 518 MobiDBLite consensus disorder prediction 84 106 - -
Vivi2g03170 518 ProSitePatterns LIM zinc-binding domain signature. 169 203 IPR001781 -
Vivi2g03170 518 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 250 - -
Vivi2g03170 518 Pfam LIM domain 169 224 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03170 Vivi-Chr2 132325443 132333918 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g03170 DA1-like 7.7e-74 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03170 - - vvo:131652152 1030.39