Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03169 ATGGGTTGGCTTACCAAGTTTCTCAATGGCTCTAATCATCGAATTTTGCGAGGTCAATACAATGGCAAACATGGTGATAATAGAATTTGGGATACTCAACATAGTTTAGTGGATGATTTGACGGATGTCGAGAAAGAAGATATCAACCGTGCTATTGCACTCTCTCTATCAGAGGAGGATCTGAAAGGGAAGAAAGTTGTTGAGGACGGCTCTCAGTCTGAAGAAGACAATGAACTTTGTAAACTTGATGAGGAAGATGAGAATGTTGGTAAAGTTCGACGAGATGAAGATGAACTGCTAGCTAAAATTCAGCAGGAGGAAAATGAACGCCGTGCCAAAGATCAACTTGAGGAAGATGAGGAACTTGCTAAGGCAATTCAATTAAGTTTGAACGTTGGTTCTCCTCCTCGACATGGCAATGATTCTTTATCTCAACCTCCTTCCCCCCTCTTTCCACCTGGATTCAGAATCTGTGCTGGATGCAATGCTGAGATTGGCCATGGGAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCACAATGCTTCTGTTGCCATACTTGCCATCTGCCAATCACTGATTACGAGTTTTCGATGAATAGCAACCGTCCTTACCATAAATCCTGCTACAAGGAGAAGCATCATCCAAGATGCGATGTTTGCAAGAATTTTATCCCGGCTAATTCAGCTGGTCTCATTGAGTATAGAGCTCACCCTTTCTGGATACAAAAATACTGTCCAACACACGAGCTCGATGGCACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGCCAAAGGATTCAAAATATATTTTGCTTGATGATGGTCGAAAGCTATGTCTCGAGTGTCTTGACTCGGCAATAATGGATAGTCATGAATGCCAACCTCTCTACCTTGAAATACTAGATTTTTACGAAGGTTTAAATATGAAATTGGAGCAGCAAGTTCCTATGCTTTTGGTCGAGAGACAGGCATTGAATGAGGCCATGGAGGGAGAAAAGAATATTTTAAAAAGACCAAAGATAGGGGCAGGACACCGAGTCACGGACATGATAACTGAGCCTTATAGACTGACCCGTCGATGTGAGGTGACAGCCGTTCTTGTTTTGTATGGCCTACCTAGGTTGTTGACCGGATCAATCCTAGCTCACGAGATAATGCATGCATGGCTAAGGCTTAAAGGTTATCCGAACCTGAGTCCAGAAGTTGAAGAGGGAATCTGCCAAGTCTTGGCTCACATGTGGTTAGAATCAGAGCTCTATTCTGGATCTGGGAATAATAACGCACCATCTTCGTCTTCATCATCGCCGTCGTCAATACCACCGTCCGCTGCTGCGTCATCAAAGAAGGGTAAACGGTCTGATTTTGAGAAGAAACTTGGGGAGTTTTTCAAACACCAGATTGAGTCCGATACCTCGTCAGCCTATGGAGATGGATTCAGATTGGGTAACAAGGCAGTACTTAAGTATGATCTCAAAAGTACCCTTGATCATATCCATTTGACCGGAACTTTTCCGTGTTGA 1524 0.4357 MGWLTKFLNGSNHRILRGQYNGKHGDNRIWDTQHSLVDDLTDVEKEDINRAIALSLSEEDLKGKKVVEDGSQSEEDNELCKLDEEDENVGKVRRDEDELLAKIQQEENERRAKDQLEEDEELAKAIQLSLNVGSPPRHGNDSLSQPPSPLFPPGFRICAGCNAEIGHGRFLSCMGGVWHPQCFCCHTCHLPITDYEFSMNSNRPYHKSCYKEKHHPRCDVCKNFIPANSAGLIEYRAHPFWIQKYCPTHELDGTPRCCSCERMEPKDSKYILLDDGRKLCLECLDSAIMDSHECQPLYLEILDFYEGLNMKLEQQVPMLLVERQALNEAMEGEKNILKRPKIGAGHRVTDMITEPYRLTRRCEVTAVLVLYGLPRLLTGSILAHEIMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGSGNNNAPSSSSSSPSSIPPSAAASSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNKAVLKYDLKSTLDHIHLTGTFPC 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03169 507 CDD LIM_DA1 158 210 - -
Vivi2g03169 507 PANTHER PROTEIN DA1-RELATED 2 3 506 IPR045218 -
Vivi2g03169 507 CDD UDM1_RNF168_RNF169-like 73 124 - -
Vivi2g03169 507 Gene3D Cysteine Rich Protein 153 216 - -
Vivi2g03169 507 SMART uim 117 136 IPR003903 -
Vivi2g03169 507 SMART uim 43 62 IPR003903 -
Vivi2g03169 507 SMART lim_4 157 209 IPR001781 -
Vivi2g03169 507 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 151 183 - -
Vivi2g03169 507 Pfam LIM domain 158 213 IPR001781 -
Vivi2g03169 507 Coils Coil 89 122 - -
Vivi2g03169 507 MobiDBLite consensus disorder prediction 64 84 - -
Vivi2g03169 507 FunFam Protein DA1-related 1 152 211 - -
Vivi2g03169 507 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Vivi2g03169 507 Pfam Protein DA1 335 501 IPR022087 -
Vivi2g03169 507 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 239 - -
Vivi2g03169 507 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Vivi2g03169 507 MobiDBLite consensus disorder prediction 426 453 - -
Vivi2g03169 507 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Vivi2g03169 507 MobiDBLite consensus disorder prediction 426 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03169 Vivi-Chr2 132325443 132333918 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi2g03169 DA1-like 7.4e-74 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03169 - - vvo:131652152 998.808