Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03143 ATGATATCTCAAAGTACCAATTATGCCCAATGGCATTTTATTTTGACCATTGCGATGATTATCTTTTTCATTCAAAAAATTAGTTGTGCCAAACAATCTGAATTAATGGGTTTAAATATGAATATGATTGATCGTTGTTGGAGGTCAAATCCTGAATGGAGGGGGCAAAGACAACAAATAGCAATTTGCTCTATAGGTTATGTTGGAAAGATGACAAACAATATTGGTAAAGACCTCATACAATATGAAGTTACTGACCCAAATGATGATCCTATAAACCCCAAACTAGGTACATTGAGATACGGAGCCTCTGTAATTCAAGGTAAAGTATGGATCACATTTAAAAAAGACATGAACATTAGACTCGTCAAACCCCTTCTCATTAGCAGTTTCACTACCATCGATGGTCGCGGTGTCAATGTCCACATTGCTAATAATGCATGTTTGATGATATTCAAGGCCACCAACATAATCATTCATAGCATTCGAATTCATCACTGCAAAGCTCAAGCCTCGGGGATGGTGATGGGACCTAATGGAAAGGTAATTAATTTAGGTCCAGTAGATGGAGACGCAATAAGATTGGTCACTGCTTCAAGAATTTGGATTGACCATAATACACTTTATGATTGTGAAGATGGTCTTCTTGATGTCACCCGAGGTTCTAGTAACGTAACTATATCCAATAATTGGTTTAGAGAACAAGATAAGGTTATGCTTCTTGGTCATGATGATGGATATGTGAGAGACAAAAACATGAAAGTCACTGTTGTGTACAATCACTTTGGACCTAATTGCAACCAAAGAATGCCTAGGATTCGCCATGGATATGCACATGTAGCCAACAATCTTTACTTAGGATGGATGCAATATGCCATTGGTGGAAGTATGGGGCCTAGTCTAAAAAGTGAGTCTAATCTCTTCATAGCACCAAAAGTTGGAAGCAAAGAGGTAACATGGAGACAAAATGATCAAACAAATAAGGACAAATGGGAATTTCATTCCGTAAGGGATGCTTTTGAAAACGGAGCCTCTTTTGTAGTAACCAATGGTGGACGTGTGCAAAAGCCAAATTATAGACAAGAAGAAGATTTTAAAGTTGTTGATGTTAAATCTGTTAGATCATTGACAAGATCATCAGGCGCACTTAAATGCACTAAAACATCTTTGTGTTGA 1176 0.3733 MISQSTNYAQWHFILTIAMIIFFIQKISCAKQSELMGLNMNMIDRCWRSNPEWRGQRQQIAICSIGYVGKMTNNIGKDLIQYEVTDPNDDPINPKLGTLRYGASVIQGKVWITFKKDMNIRLVKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHSIRIHHCKAQASGMVMGPNGKVINLGPVDGDAIRLVTASRIWIDHNTLYDCEDGLLDVTRGSSNVTISNNWFREQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMGPSLKSESNLFIAPKVGSKEVTWRQNDQTNKDKWEFHSVRDAFENGASFVVTNGGRVQKPNYRQEEDFKVVDVKSVRSLTRSSGALKCTKTSLC 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03143 391 Gene3D - 40 384 IPR012334 -
Vivi2g03143 391 PANTHER PECTATE LYASE 18-RELATED 37 388 IPR045032 GO:0030570
Vivi2g03143 391 SUPERFAMILY Pectin lyase-like 38 385 IPR011050 -
Vivi2g03143 391 SMART amb_all 117 314 IPR002022 -
Vivi2g03143 391 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Vivi2g03143 391 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Vivi2g03143 391 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Vivi2g03143 391 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Vivi2g03143 391 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Vivi2g03143 391 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Vivi2g03143 391 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Vivi2g03143 391 Pfam Pectate lyase 128 308 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03143 Vivi-Chr2 131943801 131945410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03143 71 318 Polysaccharide Lyase AT5G09280 72.581 4.94e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03143 K01728 - gmx:100780437 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03143 2 131943801 131945410 Vivi2g03143 2 131943801 131945410 ECH