Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03134 ATGTCGAGTGGTTTTGGAGAATCAACGAAATCAGCATCATCCTCTGAAGAGAACAGTTCCATTATCGATGCCGGTGATTTCAATTGTAGCATTTGCTTCGATTTTGTTCAGGAACCAGTGGTGACGCTCTGTGGTCATTTATTCTGTTGGCGATGTCTCTATAGGTGGTTACATCATCGTTCTCGTCCTAAAGGATGTCCTGTTTGCAAAGCTGTTGTTGAGGAAGAGAAATTGGTTCCTCTTTATGGTAAAGGAAAATCGGTAACTGATGATCCGAGACTGAAATCATATCTTGGAATGGAGATTCCTCCTCGTCCTTTCGGACAGAGGCCACAAACTGTTGAGGTTCATGAGGATGATGATGAGGATGATGAGGAGGAGGATGATGATGATGATGATGATGATGATGATGATGAGGAAGAGGATGAGGTGGAATTTGTTCAGGCAGAGGTGTTGGTTGAGGAAGAGGAAGTTGTTGAGGAAGAGGAAGAGGAAGCTGAGGATCCAGACTATGTTGCTGCTCCTGACACTCCATTTTTGCTGCGTGCGCGCTTGGAGTCTAGCGAACAGCGTTTCAAGGAGTATCGTGAGTCTACAGAGCAGCGTTTCAATGAGTATAATGAGTTTATCAATGAGTTTAAGGAGTTTCGCGATGAGTATAGGGAGTTTCGTGAGGCTCTGCAGCCACGTTTGGAGCAGATTGAGCAGCGTATCAAGGATATCAACGAGTGTCGTGTGGAGGCAGAGCAGCGTATTGAACAGTGTCGTGCAGAGGCAGAGCAGCGTATTGAGCAGTGTCGTGCGGAGGCAGAGCAGCGGATCAAGGAGTGTCGTGCGGAGTATGGTGCTGATACAGAGTAG 861 0.4681 MSSGFGESTKSASSSEENSSIIDAGDFNCSICFDFVQEPVVTLCGHLFCWRCLYRWLHHRSRPKGCPVCKAVVEEEKLVPLYGKGKSVTDDPRLKSYLGMEIPPRPFGQRPQTVEVHEDDDEDDEEEDDDDDDDDDDDEEEDEVEFVQAEVLVEEEEVVEEEEEEAEDPDYVAAPDTPFLLRARLESSEQRFKEYRESTEQRFNEYNEFINEFKEFRDEYREFREALQPRLEQIEQRIKDINECRVEAEQRIEQCRAEAEQRIEQCRAEAEQRIKECRAEYGADTE 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03134 286 Coils Coil 231 280 - -
Vivi2g03134 286 SUPERFAMILY RING/U-box 26 82 - -
Vivi2g03134 286 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Vivi2g03134 286 Coils Coil 206 226 - -
Vivi2g03134 286 SMART ring_2 29 69 IPR001841 -
Vivi2g03134 286 ProSiteProfiles Zinc finger RING-type profile. 29 70 IPR001841 -
Vivi2g03134 286 Coils Coil 144 164 - -
Vivi2g03134 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 14 194 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi2g03134 286 MobiDBLite consensus disorder prediction 96 143 - -
Vivi2g03134 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 89 IPR013083 -
Vivi2g03134 286 MobiDBLite consensus disorder prediction 117 143 - -
Vivi2g03134 286 Pfam Zinc finger, C3HC4 type (RING finger) 28 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03134 Vivi-Chr2 131701855 131703105 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03134 24 113 C3H Transcription Factor Family AT2G23780 67.778 9.70e-41 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03134 K10666 - gmx:100814783 157.532