Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03133 ATGAGTTCCAATATCGACGCTGCTGATTTCGAATGTAACATTTGTTTCGATTTGGCTCAGGAACCAGTGGTCACACTCTGTGGCCATTTATTCTGTTGGCCATGTCTTTACAGGTGGTTACATCATCGTTCTAATCCTCAAGGATGTCCTGTTTGCAAAACACTTGTTGAAGAACAGAAATTGATTCCTCTTTATGGTAAAGGAAGATCTGTAACTAGTCCAAGAATGGAGATTTCTCGTCGTCCTTCGGACTTTCATATATTGTTTGCGCGCTTAGAGCAATCGCTTTTGTCTCGTGAGTCTATAGAAAAGCGTTTCAAGGAGTATATAGATAAGCGTATTATGGATATTCATGAGGCTGAAGAGCAGCGTTTCGAGCGGCTTCAGGAGGCTCAAGAGCAGCGTTCTAAGCGGCTTGAGCAGCGTATCAAGGAGTGTCGCGCGAATGAAGAGCAGCGTATCAAGAGGTTTCGTGCGGATGCTGAGCAGCAGATCAAGGAGTGTCGTGCGGAGGTAGAGCAGCGTATCAAGGGGTGTCGTGCAGAGGCGGAGCAGGGAATCAAGGAGTGTCGTGTAAAATATCGCGCCGATGCAAAAGAGCGTATGAAGAAGTGTCGTGCGGATTCAGAGCAGCGTATCAAGAGGTGTCGTGCTGAGTATCGTGCGGCGTATCATGCGGAATCAGAGCAGCATATCAAGGAGTGTCGTGCGGAGACAGAGCTGCGTATCAACGAGTATCGTGTGGAGGCAGAGCAGCGTATTGAGGAGTGTCATGTGGAGGCAGAGCAGCGTATCAAGGAGTGTCGTGCGGAGTATCTTGCTGATGCAGAGCAGCGTATCAAGGAGTGTCGTGCGGAGGCAGAGCATCGTATCAAAGAGATTCGTGCGGAGGAAGAGCAGCGGATAGAGGAGTGTCATGTGGAGGCAGATCAATGTATAGAGAAGTATCATGTGGAGGCAGAGCAGCGTATCAAGGAGTATCGTGAGGAGGCTGATCAGCGTATCAAGGAGCGTCGGGCGAAGTATCACGCGGAGACAGCGATCCGTTTCCCAACTCCCAAAGTTCAATAG 1071 0.4939 MSSNIDAADFECNICFDLAQEPVVTLCGHLFCWPCLYRWLHHRSNPQGCPVCKTLVEEQKLIPLYGKGRSVTSPRMEISRRPSDFHILFARLEQSLLSRESIEKRFKEYIDKRIMDIHEAEEQRFERLQEAQEQRSKRLEQRIKECRANEEQRIKRFRADAEQQIKECRAEVEQRIKGCRAEAEQGIKECRVKYRADAKERMKKCRADSEQRIKRCRAEYRAAYHAESEQHIKECRAETELRINEYRVEAEQRIEECHVEAEQRIKECRAEYLADAEQRIKECRAEAEHRIKEIRAEEEQRIEECHVEADQCIEKYHVEAEQRIKEYREEADQRIKERRAKYHAETAIRFPTPKVQ 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03133 356 Pfam Zinc finger, C3HC4 type (RING finger) 12 52 IPR018957 GO:0046872
Vivi2g03133 356 Coils Coil 122 167 - -
Vivi2g03133 356 ProSitePatterns Zinc finger RING-type signature. 27 36 IPR017907 -
Vivi2g03133 356 SUPERFAMILY Apolipoprotein A-I 211 336 - -
Vivi2g03133 356 Coils Coil 273 304 - -
Vivi2g03133 356 SUPERFAMILY RING/U-box 8 65 - -
Vivi2g03133 356 Coils Coil 317 337 - -
Vivi2g03133 356 CDD RING-HC_AtRMA-like 10 53 - -
Vivi2g03133 356 ProSiteProfiles Zinc finger RING-type profile. 12 53 IPR001841 -
Vivi2g03133 356 SMART ring_2 12 52 IPR001841 -
Vivi2g03133 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 74 IPR013083 -
Vivi2g03133 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 162 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03133 Vivi-Chr2 131680618 131683401 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03133 3 84 C3H Transcription Factor Family AT2G23780 60.227 5.81e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03133 K10666 - psat:127123686 281.182