Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03132 ATGTCGAGTGGTTTTGGAGAAACAATGAGTTCCAATATCGACGCTGCTGATTTCGAATGTAACATTTGTTTCGATTTGGCTCAGGAACCAGTGGTGACGCTTTGTGGTCATTTATTCTGTTGGCCATGTCTTTACAGGTGGTTACATCATCGTTCTAATCCTCAAGGATGCCCTGTTTGCAAAACACTTGTTGAAGAACAGAAATTGGTTCCTCTTTATGGTAAAGGAAGATCTGTAACTAGTCCAAGAATGGAGGTTCCTCGTCGTCCTTCGGACTTTCATATATTGTTTGCGCGCTTAGAGCAATCGCTTTTGTCTCGTCAGTCTACAGAAAAGCGTTTCAAGGAGTATATAGATAAGCGTATTATGGAGATTCATGAGGCTGAAGAGCAGCGTTTCGAGCTGCTTCAGGGGGCTCAAGAGCAGCGTTCCAAGCGGCTTGAGCAGCGTATTAAGGATTGTCGCGCGAATGAAGAGCAGCGTATCAAGAGGTTTCGTGCGGTTGCTGAGCAGCTTATCAAGGAGCGTCGTGCGGTGGTAGAGCAGTGTATCAAGGAGTGTAGCCCAGAGGCAGAGCGGCGTATCAAGGAGTGTCGTGCCGATGCAAAAGAGCGTATCAAGAAGTGTCAGGCAGATGCAGAGCAGGGTATCAAGAGGTGTCGTGCTGAGTTTCTTGCGGAATCAGAGCAACATATCAAGAAGTATCGTGCGGAATCAGGGCAGCTTATGCTCGAGTGTCATGCTGAGTATCGATCGAAATCAGAGCAGCATATCAAGGAGTGTCGTGCGGAGACAGCGCAGCGTATCATGGAGTATCGTGCAGAGGCAGAGCAGCGTATCAAGGAGTATCTTTCGGATGCAAAGCAGCGTATCCAGGAGAGTCGTACCGAGTTTCTTGCGGATGCAGAGCAGCGTATCAAGGAGTGTCGTGCGGAGGCAGAGCATCGTATCAAAGAGATTCGTGCGGAGGAAGAGCAGCGTATACAGAAGTGTCATGCAGAGGCTGATCAACGAATTAAGGAGTATCAGGCGGAGTATCGTGTGGAGGCAGAGTAG 1056 0.4867 MSSGFGETMSSNIDAADFECNICFDLAQEPVVTLCGHLFCWPCLYRWLHHRSNPQGCPVCKTLVEEQKLVPLYGKGRSVTSPRMEVPRRPSDFHILFARLEQSLLSRQSTEKRFKEYIDKRIMEIHEAEEQRFELLQGAQEQRSKRLEQRIKDCRANEEQRIKRFRAVAEQLIKERRAVVEQCIKECSPEAERRIKECRADAKERIKKCQADAEQGIKRCRAEFLAESEQHIKKYRAESGQLMLECHAEYRSKSEQHIKECRAETAQRIMEYRAEAEQRIKEYLSDAKQRIQESRTEFLADAEQRIKECRAEAEHRIKEIRAEEEQRIQKCHAEADQRIKEYQAEYRVEAE 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03132 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 167 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi2g03132 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 81 IPR013083 -
Vivi2g03132 351 Coils Coil 155 175 - -
Vivi2g03132 351 SMART ring_2 20 60 IPR001841 -
Vivi2g03132 351 Coils Coil 299 326 - -
Vivi2g03132 351 Coils Coil 273 293 - -
Vivi2g03132 351 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Vivi2g03132 351 CDD RING-HC_AtRMA-like 18 61 - -
Vivi2g03132 351 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Vivi2g03132 351 SUPERFAMILY RING/U-box 16 73 - -
Vivi2g03132 351 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03132 Vivi-Chr2 131664482 131665537 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03132 11 91 C3H Transcription Factor Family AT2G23780 62.069 2.44e-37 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03132 K10666 - psat:127123686 259.225