Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03131 ATGTCGAGTGGTTTTGAAGAATCAACGAAATCAGCATCATCTTCTTCGGGGAACAGTTCCAATAACGGTGCTGCTGATTTTGAATGCAACATTTGTTACGATTTGGCTCGGGATCCAGTGGTGACGCTCTGTGGTCATTTATTCTGTTGGCCGTGTCTTTACAGGTGGTTGCATCGTCGTTCTCGTTCTCGAGGATGTCCTCTTTGCAAAGCACTTGTTGAAGAACAGAAACTGGTTCCTCTTTATGGTAAAGGAAGATCGGTAACTGATTCAAGAATGGAGATTCCTCCTCGTCCTTCAGGACAGAGGCCACAAACTGTTGTGGAAGAGGAACTTGAGGCTCCACGTGACATTCATGTGTTGGATGTGCGCTTGGAGATAGATCAGCCTATTGAGGAGTTTCGTGCGGTTGCAGAGCAGCGTTTCAACGAGTATATAGATGAGCGTATCCAGGAGTATCGTGCGGTTGTAGAGCAGCATATCAGGGAGCAGATAGATCAGCGTATCGAAGAGTATCGCGTGTCTATAGAGCAGCGTTTCAATGAGAGTATAGATCAGCGTATAGAAGAGTATCGAGCGGCTTCAGGCGTCTGA 594 0.468 MSSGFEESTKSASSSSGNSSNNGAADFECNICYDLARDPVVTLCGHLFCWPCLYRWLHRRSRSRGCPLCKALVEEQKLVPLYGKGRSVTDSRMEIPPRPSGQRPQTVVEEELEAPRDIHVLDVRLEIDQPIEEFRAVAEQRFNEYIDERIQEYRAVVEQHIREQIDQRIEEYRVSIEQRFNESIDQRIEEYRAASGV 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03131 197 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 11 115 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi2g03131 197 MobiDBLite consensus disorder prediction 1 21 - -
Vivi2g03131 197 SMART ring_2 29 69 IPR001841 -
Vivi2g03131 197 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Vivi2g03131 197 Pfam Zinc finger, C3HC4 type (RING finger) 29 69 IPR018957 GO:0046872
Vivi2g03131 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 86 IPR013083 -
Vivi2g03131 197 ProSiteProfiles Zinc finger RING-type profile. 29 70 IPR001841 -
Vivi2g03131 197 SUPERFAMILY RING/U-box 25 82 - -
Vivi2g03131 197 CDD RING-HC_AtRMA-like 27 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03131 Vivi-Chr2 131660301 131661553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03131 18 106 C3H Transcription Factor Family AT2G23780 62.105 4.68e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03131 K10666 - vvo:131650022 197.978