Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi2g03124 | ATGTCGAGTGGCTTTGGAGAATCAGTGAAATCAGCGACTGCACCACCGAATCCATCATGTTCTTCGGGTAAAAGTTCCACCAAGGATGCCGGTGATTTCGAATGCAACATTTGTTTGGATTTTCCTCTGGATCCAGTGGTGACACTCTGTGGTCATCTATTCTGTTGGCCATGTCTTTACAGGTGGTTACACCATCGTTCTCGTCCTCAAGGATGTCCTGTTTGCAAAGCAATGGTGAAAGAACAGAAACTGGTTCCTCTTTATGGAACAGGAAAACTGGTAACTGATCCAAGAATGAAGTCATATCTTGGAATGGAGATTCCTCCTCGTCCTTCAGGACAGAGGCCACCAACTGTTCTGGAACAGCAACTTGAGACTCATACGTTGTCTCTGCTCTGGGAGCGAGGTCAACCTGTTGAGGAGTTTCGTGCGGCTGCAGAGCAGCGTTGCAATGAGTATATAGATGAGCGTATCCAGGAGTATCGCGCGGCTACAGAGCAGCATGTCAAGGAGCAGATACAGCATATCGAAGAGTATCGTGTGTCTATCGAGCAGCGTTTTAATGAGTGTCTGGATCAGCGTATAGAAGAGTTTCGAGCGGCTTATGGCATCTGA | 615 | 0.4748 | MSSGFGESVKSATAPPNPSCSSGKSSTKDAGDFECNICLDFPLDPVVTLCGHLFCWPCLYRWLHHRSRPQGCPVCKAMVKEQKLVPLYGTGKLVTDPRMKSYLGMEIPPRPSGQRPPTVLEQQLETHTLSLLWERGQPVEEFRAAAEQRCNEYIDERIQEYRAATEQHVKEQIQHIEEYRVSIEQRFNECLDQRIEEFRAAYGI | 204 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi2g03124 | 204 | SMART | ring_2 | 35 | 75 | IPR001841 | - | |
Vivi2g03124 | 204 | ProSiteProfiles | Zinc finger RING-type profile. | 35 | 76 | IPR001841 | - | |
Vivi2g03124 | 204 | Pfam | Zinc finger, C3HC4 type (RING finger) | 35 | 75 | IPR018957 | GO:0046872 | |
Vivi2g03124 | 204 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 101 | IPR013083 | - | |
Vivi2g03124 | 204 | ProSitePatterns | Zinc finger RING-type signature. | 50 | 59 | IPR017907 | - | |
Vivi2g03124 | 204 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 21 | 143 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Vivi2g03124 | 204 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Vivi2g03124 | 204 | CDD | RING-HC_AtRMA-like | 33 | 77 | - | - | |
Vivi2g03124 | 204 | SUPERFAMILY | RING/U-box | 32 | 93 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi2g03124 | Vivi-Chr2 | 131633433 | 131634047 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi2g03124 | 24 | 118 | C3H Transcription Factor Family | AT2G23780 | 66.316 | 2.20e-43 | 143 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi2g03124 | K10666 | - | gmx:100814783 | 184.496 |