Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03124 ATGTCGAGTGGCTTTGGAGAATCAGTGAAATCAGCGACTGCACCACCGAATCCATCATGTTCTTCGGGTAAAAGTTCCACCAAGGATGCCGGTGATTTCGAATGCAACATTTGTTTGGATTTTCCTCTGGATCCAGTGGTGACACTCTGTGGTCATCTATTCTGTTGGCCATGTCTTTACAGGTGGTTACACCATCGTTCTCGTCCTCAAGGATGTCCTGTTTGCAAAGCAATGGTGAAAGAACAGAAACTGGTTCCTCTTTATGGAACAGGAAAACTGGTAACTGATCCAAGAATGAAGTCATATCTTGGAATGGAGATTCCTCCTCGTCCTTCAGGACAGAGGCCACCAACTGTTCTGGAACAGCAACTTGAGACTCATACGTTGTCTCTGCTCTGGGAGCGAGGTCAACCTGTTGAGGAGTTTCGTGCGGCTGCAGAGCAGCGTTGCAATGAGTATATAGATGAGCGTATCCAGGAGTATCGCGCGGCTACAGAGCAGCATGTCAAGGAGCAGATACAGCATATCGAAGAGTATCGTGTGTCTATCGAGCAGCGTTTTAATGAGTGTCTGGATCAGCGTATAGAAGAGTTTCGAGCGGCTTATGGCATCTGA 615 0.4748 MSSGFGESVKSATAPPNPSCSSGKSSTKDAGDFECNICLDFPLDPVVTLCGHLFCWPCLYRWLHHRSRPQGCPVCKAMVKEQKLVPLYGTGKLVTDPRMKSYLGMEIPPRPSGQRPPTVLEQQLETHTLSLLWERGQPVEEFRAAAEQRCNEYIDERIQEYRAATEQHVKEQIQHIEEYRVSIEQRFNECLDQRIEEFRAAYGI 204
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03124 204 SMART ring_2 35 75 IPR001841 -
Vivi2g03124 204 ProSiteProfiles Zinc finger RING-type profile. 35 76 IPR001841 -
Vivi2g03124 204 Pfam Zinc finger, C3HC4 type (RING finger) 35 75 IPR018957 GO:0046872
Vivi2g03124 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 101 IPR013083 -
Vivi2g03124 204 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Vivi2g03124 204 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 21 143 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi2g03124 204 MobiDBLite consensus disorder prediction 1 25 - -
Vivi2g03124 204 CDD RING-HC_AtRMA-like 33 77 - -
Vivi2g03124 204 SUPERFAMILY RING/U-box 32 93 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi2g03124 Vivi-Chr2 131633433 131634047 Dispersed/Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03124 24 118 C3H Transcription Factor Family AT2G23780 66.316 2.20e-43 143
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03124 K10666 - gmx:100814783 184.496