Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03121 ATGTCAAGTGGTTTTGGAGAATCAATGAGATCAGAGACTACGCCGAATCCATCGTGTTCTTCGGGGAACAACAGTTCGAACAATGATGCTGGTGATTTTGAATGTAACATTTGTTTTGATTTGGCTCAGGATCCTGTGATCACACTTTGTGGTCATTTATTCTGTTGGCCATGTCTTTACAGGTGGTTACATCATCATTCTCATTCTCAAGAATGTCCTGTTTGCAAAGCACTTGTTGAAGAACAGAAATTGGTTCCTCTTTACGGTAGAGGAAAATCGCAGACTGATCCGAGGACTAAATCGTATCCTGGAATGGAGATTCCTCGGCGTCCTTCGGGACAGAGGCCACAGACGGCGAATCCTCCTCCGGAGGCGAATTATGCTGGGGTTGGATTGATGGGTGGTTTTATTCCAATGGCTACGGCTAGGTTTGGAAACTTTTCGCTTTCGACGGGTTTTGGTGGGTTTGGAGGGTTTCTTCCGTCGCTGTTCAATATTCACTTTCATGGTTTTCAGGATGGGACTGTTTATGGGACAACGTCTGGTTATCCCATGGGGTTTAATGGGTTTCAGGGTGGAAATGCGAGAGGTTTTAATTCGCAGGAGACAGGACAACAAGTGCAGCGGCAGGAGGATAATGTTTTGAAGAATTTGCTTATGTTGATTGGAGTTCTTGTTCTTATAACGGTTATTTTTGTTATGTGA 705 0.4426 MSSGFGESMRSETTPNPSCSSGNNSSNNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVEEQKLVPLYGRGKSQTDPRTKSYPGMEIPRRPSGQRPQTANPPPEANYAGVGLMGGFIPMATARFGNFSLSTGFGGFGGFLPSLFNIHFHGFQDGTVYGTTSGYPMGFNGFQGGNARGFNSQETGQQVQRQEDNVLKNLLMLIGVLVLITVIFVM 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03121 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 97 IPR013083 -
Vivi2g03121 234 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 18 89 - -
Vivi2g03121 234 SUPERFAMILY RING/U-box 31 88 - -
Vivi2g03121 234 MobiDBLite consensus disorder prediction 89 124 - -
Vivi2g03121 234 ProSiteProfiles Zinc finger RING-type profile. 35 76 IPR001841 -
Vivi2g03121 234 Pfam Zinc finger, C3HC4 type (RING finger) 34 75 - -
Vivi2g03121 234 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Vivi2g03121 234 MobiDBLite consensus disorder prediction 1 25 - -
Vivi2g03121 234 SMART ring_2 35 75 IPR001841 -
Vivi2g03121 234 CDD RING-HC_AtRMA-like 33 77 - -
Vivi2g03121 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 228 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03121 Vivi-Chr2 131533838 131535163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03121 23 232 C3H Transcription Factor Family AT2G23780 62.273 1.67e-90 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03121 K10666 - gmx:100814783 367.466