Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03120 ATGTCGAGTGGTTTTGGAGAATCAACGAAATCAGTGTCCTCTGAAGAGAACAGTTCCATTATCGATGCCGGTGATTTCAATTGTAGCATTTGCTTCGATTTTGTTCAGGAACCAGTGGTGACGCTCTGTGGTCATTTATTCTGTTGGCGATGTCTCTATAGGTGGTTACATCATCGTTCTCGTCCTAAAGGATGTCCTGTTTGCAAAGCTGTTGTTGAGGAAGATAAATTGGTTCCTCTTTATGGTAAAGGAAAATCGGTAACTGATGATCCGAGAATGAAATCGTATCTTGGAATGGAGATTCCTCCTCGTCCTTTCGGACAGAGGCCACAAACTGTTGAGGTTCAGGAGGATGATGAGGATGATGAGGAGGATGAGGAGGATGATGAGGATGAGGATGAGGATGATGATGATGATGATGATGATGATGATGATGAGGAAGAGGATGAGGTGGAATTTGTTCAGGCAGAGGGGTTGGTTGAGGAAGAGGAAGTTGTTGAGGAAGAGGAAGCTGAGGATCCAGACTATGTTGCCGCTCCTGACACTCCATTTTTGCTGCGTGCGCGCTTGGAGTCTAGCGAACAGCGTTTCAAGGAGTATCGTGAGTCTACAGAGCAGCGTTTCAATGAGTATAATGAGTTTATCAATGAGTTTAAGGAGTTTCGCGATGAGTATAGGGAGTTTCGTGAGGCTCTGCAGCCACGTTTGGAGCAGATTGAGCAGCGCATCAAGGATATCAACGAGTGTCGCGTGGAGGCAGAGCAGCGTATTGAACAGTGTCGTGCAGAGGCAGAGCAGCGGATTGAGCAGTGTCGTGCGGAGGCAGAGCAGCGGATCAAGGAGTGTCGTGCGGAGTATGGTGCTGATACAGAGTAG 876 0.4749 MSSGFGESTKSVSSEENSSIIDAGDFNCSICFDFVQEPVVTLCGHLFCWRCLYRWLHHRSRPKGCPVCKAVVEEDKLVPLYGKGKSVTDDPRMKSYLGMEIPPRPFGQRPQTVEVQEDDEDDEEDEEDDEDEDEDDDDDDDDDDDEEEDEVEFVQAEGLVEEEEVVEEEEAEDPDYVAAPDTPFLLRARLESSEQRFKEYRESTEQRFNEYNEFINEFKEFRDEYREFREALQPRLEQIEQRIKDINECRVEAEQRIEQCRAEAEQRIEQCRAEAEQRIKECRAEYGADTE 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03120 291 ProSitePatterns Zinc finger RING-type signature. 43 52 IPR017907 -
Vivi2g03120 291 SMART ring_2 28 68 IPR001841 -
Vivi2g03120 291 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 14 199 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi2g03120 291 MobiDBLite consensus disorder prediction 115 176 - -
Vivi2g03120 291 SUPERFAMILY RING/U-box 25 81 - -
Vivi2g03120 291 Coils Coil 236 285 - -
Vivi2g03120 291 Pfam Zinc finger, C3HC4 type (RING finger) 27 68 - -
Vivi2g03120 291 ProSiteProfiles Zinc finger RING-type profile. 28 69 IPR001841 -
Vivi2g03120 291 Coils Coil 211 231 - -
Vivi2g03120 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 86 IPR013083 -
Vivi2g03120 291 MobiDBLite consensus disorder prediction 89 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03120 Vivi-Chr2 131500254 131501896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03120 23 112 C3H Transcription Factor Family AT2G23780 68.889 1.68e-41 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03120 K10666 - gmx:100814783 162.925