Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03119 ATGAGTTCCAATAACGAAGCTGCTGATTTCGAATGTAACATTTGTTTCGATTTGGCTCAGGAACCAGTGGTCACACTCTGTGGCCATTTATTCTGTTGGCCATGTCTTTACAGGTGGTTACATCATCGTTCTAATCCTCAAGGATGTCCTGTTTGCAAAACACTTGTTGAAGAACAGAAATTGATTCCTCTTTATGGTAAAGGAAGATCTGTAACTAGTCCAAGAATGGAGATTCCTCGTCGTCCTTCGGACTTTCATATATTGTTTGCGCGCTTAGAGCAATCGCTTTTGTCTCGTGAGTCTATAGAAAAGCGTTTCAAGGAGTATATAGATAAGCGTATTATGGATATTCATGAGGCTGAAGAGCAGCGTTTCGAGCGGCTTCAGGAGGCTCAAGAGCAGCGTTCTAAGCGGCTTGAGCAGCGTATCAAGGAGTGTCGCGCGAATGAAGAGCAGCGTATCAAGAGGTTTCGTGCGGATGCTGAGCAGCAGATCAAGGAGTGTCGTGCGGAGGTAGAGCAGCGTATCAAGGGGTGTCGTGCAGAGGCGGAGCAGGGAATCAAGGAGTGTCGTGTAAAATATCGCGCCGATGCAAAAGAGCGTATGAAGAAGTGTCGTGCGGATTCAGAGCAGCGTATCAAGAGGTGTCGTGCTGAGTATCGTGCGGCGTATCATGCGGAATCAGAGCAGCATATCAAGGAGTGTCGTGCGGAGACAGAGCTGCGTATTAATGAGTATCGTGTGGAGGCTGAGCAGCGTATTGAGGAGTGTCATATGGAGGCAGAGCAGCGTATCAAGGAGTGTCGTGCGGAGTATCTTGCTGATGCAGAGCAGCGTATCAAGGAGTGTCGTGCGGAGGCAGAGCATCGTATCAAAGAGATTCGTGCGGAGGAAGAGCAGCGGATAGAGGAGTGTCATGTGGAGGCAGATCAATGTATAGAGAAGTATCATGTGGAGGCAGAGCAGCGTATCAAGGAGTATCGTGAGGAGGCTGATCAGCGTATCAAGGAGCGTCGGGCGAAGTATCACGCGGAGACAGCGATCCGTTTCCCAACTCCCAAGTAA 1065 0.492 MSSNNEAADFECNICFDLAQEPVVTLCGHLFCWPCLYRWLHHRSNPQGCPVCKTLVEEQKLIPLYGKGRSVTSPRMEIPRRPSDFHILFARLEQSLLSRESIEKRFKEYIDKRIMDIHEAEEQRFERLQEAQEQRSKRLEQRIKECRANEEQRIKRFRADAEQQIKECRAEVEQRIKGCRAEAEQGIKECRVKYRADAKERMKKCRADSEQRIKRCRAEYRAAYHAESEQHIKECRAETELRINEYRVEAEQRIEECHMEAEQRIKECRAEYLADAEQRIKECRAEAEHRIKEIRAEEEQRIEECHVEADQCIEKYHVEAEQRIKEYREEADQRIKERRAKYHAETAIRFPTPK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03119 354 Coils Coil 122 167 - -
Vivi2g03119 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 164 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi2g03119 354 Coils Coil 273 304 - -
Vivi2g03119 354 Coils Coil 251 271 - -
Vivi2g03119 354 SUPERFAMILY RING/U-box 8 65 - -
Vivi2g03119 354 Pfam Zinc finger, C3HC4 type (RING finger) 12 52 IPR018957 GO:0046872
Vivi2g03119 354 ProSitePatterns Zinc finger RING-type signature. 27 36 IPR017907 -
Vivi2g03119 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 66 IPR013083 -
Vivi2g03119 354 Coils Coil 317 337 - -
Vivi2g03119 354 CDD RING-HC_AtRMA-like 10 53 - -
Vivi2g03119 354 ProSiteProfiles Zinc finger RING-type profile. 12 53 IPR001841 -
Vivi2g03119 354 SMART ring_2 12 52 IPR001841 -
Vivi2g03119 354 SUPERFAMILY Apolipoprotein A-I 211 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03119 Vivi-Chr2 131490623 131491687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03119 3 84 C3H Transcription Factor Family AT2G23780 61.364 4.04e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03119 K10666 - psat:127123686 283.878