Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03118 ATGTCGACTGGTTTTGGAGAAACAATGAGTTCCAATATCGACGCTGCTGATTTCGAATGTAACATTTGTTTCGATTTGGCTCAGGAACCAGTGGTCACACTCTGTGGCCATTTATTCTGTTGGCCGTGTCTTTACAGGTGGTTACATCATCGTTCTAATCCTCAAGGATGTCCTGTTTGCAAAACACTTGTTGAAGAACAGAAATTGGTTCCTCTTTATGGTAAAGGAAGATCTGTAACTGATTCAAGAATGGAGATTCCTCGTCGTCCTTCGGACTTTCATATATTGTTTGCGCGCTTAGAGCAATCGTTTTTGTCTCGTCAGTCTAGAGAAAAGCGTTTCAAGGAGTATATAGATAAGCGTATTATGGAGATTCATGAGGCTGAAGAGCAGCGCTTCCAGCGACTTCAGGAGGCTCAAGAGCAGCGTTCCAAGCGGCTTGAGCAGCATATTAAGGATTGTCGCGCGAATGAAGAGCAGCGTATCAAGAGGTTTCGTGCGGTTGTTGAGCAGCGTATCAAGGAGTGTCGTGCGGTGGTAGAGCAGTGTATCAAGGAGTGTCGCCCAGAGGCAGAGCGGCGTATCAAGGAGTGTCGCGCCGATGCAAAAGAGCGTATCAAGAAGTGTCAGGCAGATGCAGATCAGGGTATCAAGAGGTGTCGTGCTGAGTTTCTTGCGGAATCAGAGCAACATATCAAGAAGTATCGTGCGGAATCAGGGCAGCTTATGCTCAAGTGTCGTGCTGAGTATCGTGCGAAATCAGAGCAGCATATCAAGGAGTGTCGTGCGGAGACAACGCAGCGTATCATGGAGTATCGTGCAGAGGCAGAGCAGCGTATCAAGGAGTATCTTTCAGATGCAAAGCAGCGTATCCAGGAGAGTCGTACCAAGTTTCTTGCGGATGCAGAGCAGCGTATCAAGGAGTGTCGTGTGGAGGCAGAGCATCGTATCAAAGAGATTCGTGCGGAGGAAGAGCAGCGTATACAGGAGTGTCATGCAGAGGCAGATCAACGAATTAAGGAGTATCAGGCGGAGTATCGTGTGGAGGCAGAGCAGCGTATCAAGGAGTATCGTGCGGAGGCACAGCAGCGTATCAAGGAGCGTCGGGCGGAGTATCACGCGGAGACAGCACAGCGTCTCCGGAGTAACCACGTTTATATCTCTACTTAG 1170 0.4897 MSTGFGETMSSNIDAADFECNICFDLAQEPVVTLCGHLFCWPCLYRWLHHRSNPQGCPVCKTLVEEQKLVPLYGKGRSVTDSRMEIPRRPSDFHILFARLEQSFLSRQSREKRFKEYIDKRIMEIHEAEEQRFQRLQEAQEQRSKRLEQHIKDCRANEEQRIKRFRAVVEQRIKECRAVVEQCIKECRPEAERRIKECRADAKERIKKCQADADQGIKRCRAEFLAESEQHIKKYRAESGQLMLKCRAEYRAKSEQHIKECRAETTQRIMEYRAEAEQRIKEYLSDAKQRIQESRTKFLADAEQRIKECRVEAEHRIKEIRAEEEQRIQECHAEADQRIKEYQAEYRVEAEQRIKEYRAEAQQRIKERRAEYHAETAQRLRSNHVYIST 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03118 389 Coils Coil 137 157 - -
Vivi2g03118 389 Coils Coil 332 378 - -
Vivi2g03118 389 Coils Coil 299 319 - -
Vivi2g03118 389 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Vivi2g03118 389 SUPERFAMILY RING/U-box 16 73 - -
Vivi2g03118 389 SUPERFAMILY Apolipoprotein A-I 114 264 - -
Vivi2g03118 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 159 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi2g03118 389 SMART ring_2 20 60 IPR001841 -
Vivi2g03118 389 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 IPR018957 GO:0046872
Vivi2g03118 389 Coils Coil 273 293 - -
Vivi2g03118 389 CDD RING-HC_AtRMA-like 18 61 - -
Vivi2g03118 389 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Vivi2g03118 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 85 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03118 Vivi-Chr2 131461770 131462939 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03118 11 92 C3H Transcription Factor Family AT2G23780 62.500 3.00e-37 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03118 K10666 - psat:127123686 283.878