Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03117 ATGTCGAATAGTTTTCGAGAATCAACGAAATCAGCATCTTCTTCTTCGGGGAACAGTCCCAATAACGATGCTGCTGATTTTGAATGCAACATTTGTTTCGATTTGGCTCGGGATCCAGTGGTGACTCTTTGCGGTCATCTATTCTGTTGGCCGTGTCTTTACAGGTGGTTACACCATCGTTCTTGTTCTCATGGATGTCCTCTTTGCAAAGCAATGGTGGAAGAACAGAAATTGGTGCCTCTTTATGGTAAAGGAAAATCGGTAACTGATGATCCAAGATTGAACTCATATCTTGGAATGGAGATTCCTCCTCGTCCTTTCGGACAGAGGCCACAAACTGTTGTGGAAGAGGAACTTGAGGCTCCACGTGACATTCATGTGTTGGATGTGCGCTTGGAGATAGATCAGCCTATTGAGGAGTATCGTGCGGTTGCAGAGCAGCGTTTCAACGAGTATATAGATGAGCGTATCCAGGAGTATCGTGCGGTTGTAGAGCAGCATATCAGGGAGCAGATAGATCAGCGTATCGAAGAGTATCGTGTGTCTATAGAGCAGCGTTTCAATGAGAGTATAGATCAGCGTATAGAAGAGTATCGAGCGGCTTCAGGCGTCTGA 615 0.4569 MSNSFRESTKSASSSSGNSPNNDAADFECNICFDLARDPVVTLCGHLFCWPCLYRWLHHRSCSHGCPLCKAMVEEQKLVPLYGKGKSVTDDPRLNSYLGMEIPPRPFGQRPQTVVEEELEAPRDIHVLDVRLEIDQPIEEYRAVAEQRFNEYIDERIQEYRAVVEQHIREQIDQRIEEYRVSIEQRFNESIDQRIEEYRAASGV 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03117 204 MobiDBLite consensus disorder prediction 1 21 - -
Vivi2g03117 204 ProSiteProfiles Zinc finger RING-type profile. 29 70 IPR001841 -
Vivi2g03117 204 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Vivi2g03117 204 Pfam Zinc finger, C3HC4 type (RING finger) 28 69 - -
Vivi2g03117 204 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 121 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi2g03117 204 SMART ring_2 29 69 IPR001841 -
Vivi2g03117 204 SUPERFAMILY RING/U-box 25 82 - -
Vivi2g03117 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Vivi2g03117 204 CDD RING-HC_AtRMA-like 27 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03117 Vivi-Chr2 131458454 131459068 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03117 18 113 C3H Transcription Factor Family AT2G23780 67.708 2.20e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03117 K10666 - vvo:131650022 180.259