Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03114 ATGTCGAGTGGCTTTGGAGAATCAGTGAAATCAGCTACTGCACCACCGAATCCATCATGTTCTTCGGGTGAAAGTTCCACCAAGGATGCCGGTGATTTCGAATGCAACATTTGTTTGGACTTTCCTCTGGATCCAGTGGTGACACTCTGTGGTCATCTATTCTGTTGGCGATGTCTTTACAGGTGGTTACACCATCGTTCTCGTCCTCAAGGATGTCCTGTTTGCAAAGCAATGGTGAAAGAACAGAAACTGGTTCCTCTTTATGGAACAGGAAAACTGGTAACTGATCCAAGAATGAAGTCATATCTTGGAATGGAGATTCCTCCTCGTCCTTCAGGACAGAGGCCACCAACTGTTCTGGAACAGCAACTTGAGACTCATACGTTGTCTCTGCTCTGGGAGCGAGGTCAACCTGTTGAGGAGTTTCGTGCGGCTGCAGAGCAGCGTTGCAATGAGTATATAGATGAGCGTATCCAGGAGTATCGCGCGGCTACAGAGCAGCATGTCAAGGAGCAGATAGATCAGCATATCGAAGAGTATCGCGTGTCTATAGAGCAGCGTTTTAATGAGTGTCTGGATCAGCGTATAGAAGAGTTTCGCGCGGCTTATGGCATCTGA 618 0.4773 MSSGFGESVKSATAPPNPSCSSGESSTKDAGDFECNICLDFPLDPVVTLCGHLFCWRCLYRWLHHRSRPQGCPVCKAMVKEQKLVPLYGTGKLVTDPRMKSYLGMEIPPRPSGQRPPTVLEQQLETHTLSLLWERGQPVEEFRAAAEQRCNEYIDERIQEYRAATEQHVKEQIDQHIEEYRVSIEQRFNECLDQRIEEFRAAYGI 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03114 205 SMART ring_2 35 75 IPR001841 -
Vivi2g03114 205 ProSiteProfiles Zinc finger RING-type profile. 35 76 IPR001841 -
Vivi2g03114 205 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 21 143 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi2g03114 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 101 IPR013083 -
Vivi2g03114 205 Pfam Zinc finger, C3HC4 type (RING finger) 35 75 IPR018957 GO:0046872
Vivi2g03114 205 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Vivi2g03114 205 MobiDBLite consensus disorder prediction 1 25 - -
Vivi2g03114 205 SUPERFAMILY RING/U-box 32 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03114 Vivi-Chr2 131440933 131441550 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03114 24 118 C3H Transcription Factor Family AT2G23780 65.263 5.09e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03114 K10666 - gmx:100814783 181.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi2g03114 2 131440933 131441550 Vivi2g03114 2 131440933 131441550 ECH
Vivi4g05737 4 193759223 193760811 Vivi2g03114 2 131440933 131441550 ECH