Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi2g03113 ATGTCGAGTGGTTTTCGAGAATCAACGAAACCCGCATCGTCTTCTTCGGGGAACAGTTCCAACAACGGTGCTGCTGATTTTGAATGCAACATTTGTTACGATTTGGCTCGGGATCCAGTGGTGACGCTCTGTGGTCATCTATTCTGTTGGCCATGTCTTTACCGGTGGTTGCACCATCGTTCTCGTTCTCGAGGATGTCCTCTTTGCAAAGCACTTGTGGAAGAAGAGAAACTGGTTCCTCTTTATGGTAAAGGAAGATCGGTAACTGATTCAAGATTGGAGATTCCTCCTCGTCCTTTAGGACAGAGGCCACCAACGGTTGAGGAAGAGGAAGATGATCTTGCTGTGGAAGAAGAAGAGAGAGAGGAAGCCACTTTCACTACTACCATTCAATTGGATAATATGAAATGA 411 0.4599 MSSGFRESTKPASSSSGNSSNNGAADFECNICYDLARDPVVTLCGHLFCWPCLYRWLHHRSRSRGCPLCKALVEEEKLVPLYGKGRSVTDSRLEIPPRPLGQRPPTVEEEEDDLAVEEEEREEATFTTTIQLDNMK 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi2g03113 136 MobiDBLite consensus disorder prediction 1 21 - -
Vivi2g03113 136 Coils Coil 107 127 - -
Vivi2g03113 136 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 119 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vivi2g03113 136 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Vivi2g03113 136 Pfam Zinc finger, C3HC4 type (RING finger) 28 69 - -
Vivi2g03113 136 SMART ring_2 29 69 IPR001841 -
Vivi2g03113 136 SUPERFAMILY RING/U-box 25 82 - -
Vivi2g03113 136 ProSiteProfiles Zinc finger RING-type profile. 29 70 IPR001841 -
Vivi2g03113 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 83 IPR013083 -
Vivi2g03113 136 MobiDBLite consensus disorder prediction 90 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi2g03113 Vivi-Chr2 131385016 131385722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi2g03113 18 106 C3H Transcription Factor Family AT2G23780 64.211 4.18e-43 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi2g03113 K10666 - vvo:131650022 253.062