Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi2g03093 | ATGAACCATTACCAACAAGACCAAATGATGCTCATTTCTCAGCTCTTTCCTGCAAGTGCTCATGCTTACACTGATACAGTTTCTCAACAAGTGGAGAAGAAACCAAGACGCAGACGCACCAAGAAGAGTAAACCCGGAGAAAATACCGCAAATGAAATGAACAAAAAGAGGAAACTTACTGAAAAACAAATGATTCTGTTGGAAGAACACTTTGGGAATGAACACAAACTTGAGTCAGAGAGAAAAGATAAACTCGCAATGGAACTTGGTTTGGATCCCAGACAAGTTGCTGTCTGGTTTCAAAACCGTCGAGCTCGCTGGAAGAACAAGAAACTCGAAGAAGAGTACACAAATTTGAAGAAGTTTCATGAATCTACCATGCTTGAAAAATGCTTGCTTGAAACTGAGGTGTTGAAATTGAGGGAACAGCTTTCTGAAGCTGAGAAGGAAATTCAGAGGCTTCGAGAGCCTAATGAAGTGGTTCCAACTAACAGTTCAAGTACTTCATCAATGTCTCAATCAATGGAAGTTGTGGAGCCACCACCATTTTTTGATGAATTTGAAGTTGATAATGTATATAATGATAATGTGTTTTTGATGCCTTACTTCAATGGCATTGAATGGACATATATCTAG | 636 | 0.3899 | MNHYQQDQMMLISQLFPASAHAYTDTVSQQVEKKPRRRRTKKSKPGENTANEMNKKRKLTEKQMILLEEHFGNEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYTNLKKFHESTMLEKCLLETEVLKLREQLSEAEKEIQRLREPNEVVPTNSSSTSSMSQSMEVVEPPPFFDEFEVDNVYNDNVFLMPYFNGIEWTYI | 211 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi2g03093 | 211 | ProSiteProfiles | 'Homeobox' domain profile. | 50 | 110 | IPR001356 | GO:0003677 | |
Vivi2g03093 | 211 | SMART | HOX_1 | 53 | 114 | IPR001356 | GO:0003677 | |
Vivi2g03093 | 211 | Coils | Coil | 137 | 157 | - | - | |
Vivi2g03093 | 211 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 29 | 170 | IPR045224 | GO:0003700 | |
Vivi2g03093 | 211 | PRINTS | Lambda-repressor HTH signature | 90 | 106 | IPR000047 | GO:0003677 | |
Vivi2g03093 | 211 | PRINTS | Lambda-repressor HTH signature | 81 | 90 | IPR000047 | GO:0003677 | |
Vivi2g03093 | 211 | SUPERFAMILY | Homeodomain-like | 54 | 117 | IPR009057 | - | |
Vivi2g03093 | 211 | CDD | homeodomain | 55 | 111 | IPR001356 | GO:0003677 | |
Vivi2g03093 | 211 | ProSitePatterns | 'Homeobox' domain signature. | 85 | 108 | IPR017970 | GO:0000981|GO:0006355 | |
Vivi2g03093 | 211 | FunFam | homeobox-leucine zipper protein ATHB-40 | 49 | 118 | - | - | |
Vivi2g03093 | 211 | Pfam | Homeodomain | 55 | 109 | IPR001356 | GO:0003677 | |
Vivi2g03093 | 211 | Gene3D | - | 46 | 118 | - | - | |
Vivi2g03093 | 211 | MobiDBLite | consensus disorder prediction | 26 | 56 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi2g03093 | Vivi-Chr2 | 130952368 | 130953971 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi2g03093 | 9 | 208 | Homeobox Transcription Factor Family | AT2G18550 | 50.952 | 1.70e-63 | 194 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-other | Vivi2g03093 | Homeodomain | 8.2e-17 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vivi2g03093 | K09338 | - | gmx:100809616 | 269.24 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vivi2g03093 | 2 | 130952368 | 130953971 | Vivi2g03093 | 2 | 130952368 | 130953971 | ECH |